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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
1
ATAC-seq
1
HiC
1
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
primary cell
Biosample term
6
fibroblast
4
skeletal muscle fiber
3
cardiomyocytes (cardiac muscle cell)
3
endothelial cell
3
enterocyte
3
heart
3
heart left ventricle
3
macrophage
3
myofibroblast cell
3
smooth muscle cell
2
cardiac fibroblast
2
muscle of leg
2
EndoC_BH1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
adipocyte
2
basal cell
2
cardiac muscle cell
2
cardiac precursors (cardiac muscle cell)
2
coronary artery
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
goblet cell
2
heart right ventricle
2
hepatocyte
2
pancreas
2
psoas muscle
2
right atrium auricular region
2
tibial artery
2
tibial nerve
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
aorta
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
bronchial goblet cell
1
caudate nucleus
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
epithelial cell of proximal tubule
1
frontal cortex
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
hepatic stellate cell
1
islet of Langerhans
1
keratinocyte
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
liver
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte of B lineage (iPSC)
1
mammary gland epithelial cell
1
mast cell
1
medulla oblongata
1
mesenchymal stem cell
1
mesothelial cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
neural cell
1
occipital lobe
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pons
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell of the brain vasculature
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
1
thyroid follicular cell
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
Organ
2
connective tissue
2
epithelium
2
pancreas
Date released
2
February, 2024
1
March, 2020
1
May, 2020
Software used
18
macs
14
r
7
samtools
6
chromhmm
6
deseq2
4
abc
2
deltasvm
2
encode-ccres
1
deeptools
1
hiccups
1
umitools
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP