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Schema
Citing CMDGA
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Annotation type
6
accessible chromatin
2
gene expression
Annotation Category
6
cis-regulatory elements
2
Gene expression levels
Annotation type Category
6
ATAC-seq
2
snRNA-seq
Available data
6
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
6
cell line
2
primary cell
Biosample term
6
EndoC_BH1
2
skeletal muscle fiber
1
adipocyte
1
endothelial cell
1
glial cell
1
leukocyte
1
mesenchymal stem cell
1
neural cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
6
epithelium
6
pancreas
2
musculature of body
Date released
6
May, 2021
2
February, 2024
Software used
39
r
16
macs
14
chromhmm
14
encode-ccres
8
samtools
6
deseq2
3
deltasvm
2
abc
2
deeptools
2
umitools
1
hiccups
1
nospecificsoft_customcode
1
qTLtools
Lab
6
AMP-T2D consortium
2
Stephen Parker, UMich
Project
8
AMP
RFA
6
AMP
2
AMP2
organ_slims!
vagina
Showing 8 of 8 results
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Download
FileSet
DSR313PSZ
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR521RFR
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR062QKS
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955RJH
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR195HKC
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR460ECL
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP