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Citing CMDGA
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Annotation type
3
target gene predictions
Annotation Category
3
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
cell
1
conventional dendritic cell
1
endothelial cell
1
macrophage
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
stellate neuron
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
2
January, 2021
1
February, 2021
Software used
41
macs
21
r
6
deseq2
6
samtools
3
chromhmm
3
cicero
3
deltasvm
3
encode-ccres
1
hiccups
1
qTLtools
Lab
3
Kyle Gaulton, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
month_released!
June, 2020
Showing 3 of 3 results
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Download
FileSet
DSR746SVT
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR998IGH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP