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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
2
bigWig
1
bigBed narrowPeak
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
14
endothelial cell of hepatic sinusoid
11
hepatocyte
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
7
pancreatic ductal cell
6
GM12878
6
H9
6
endothelial cell
6
fibroblast
6
lymphocyte
6
olfactory receptor cell
6
skeletal muscle fiber
5
T-helper 1 cell
5
left cardiac atrium
5
regulatory T cell
5
smooth muscle cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
adipocyte
4
iPSC derived cell line
3
Schwann cell
3
enterocyte
3
hepatocyte(AFP)
3
macrophage
3
mesenchymal stem cell
3
myofibroblast cell
3
pancreatic acinar cell
3
type I muscle cell
3
type II muscle cell
2
HCT116
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T cell
2
adipose-derived stem cell
2
basal cell
2
differentiating adipose-derived stem cell
2
epithelial cell of esophagus
2
glial cell
2
goblet cell
2
islet of Langerhans
2
leukocyte
2
liver
2
neural cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
skeletal muscle satellite cell
2
vascular associated smooth muscle cell
1
B cell
1
B-1a B cell
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Satellite Cells, Skeletal Muscle
1
T-helper 2 cell
1
aorta wall
1
astrocyte
1
brain
1
bronchial goblet cell
1
cardiac muscle cell
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
coronary artery
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
excitatory neuron
1
granulosa cell
1
heart
1
hippocampal neuron
1
keratinocyte
1
large intestine
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
memory B cell
1
mesothelial cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pigmented layer of retina
1
preadipocyte
1
right atrium auricular region
1
skeletal muscle
1
spleen
1
subcutaneous adipose tissue
1
thoracic aorta
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
1
tissue-resident macrophage
1
type B pancreatic cell
1
type II pneumocyte
1
visceral abdominal adipose tissue
Organ
2
epithelium
2
pancreas
2
vasculature
Life stage
1
adult
Date released
16
May, 2021
6
February, 2021
6
March, 2023
4
January, 2021
3
February, 2024
2
November, 2021
1
August, 2018
1
February, 2023
1
March, 2020
1
May, 2020
1
November, 2019
1
October, 2019
1
September, 2022
Software used
2
deltasvm
2
macs
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR963XVP
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR265TNH
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR986YKL
released
Annotation file set
: Accessible chromatin annotation of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP