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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
Fine-mapped variants
Annotation Category
3
Genetic variant effects
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
1
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
Biosample term
6
fibroblast
3
coronary artery
3
enterocyte
3
macrophage
3
myofibroblast cell
3
right atrium auricular region
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
ascending aorta
2
basal cell
2
body of pancreas
2
cardiac muscle cell
2
caudate nucleus
2
cerebellum (Hemisphere)
2
endothelial cell
2
epithelial cell of esophagus
2
frontal cortex
2
goblet cell
2
heart
2
heart left ventricle
2
hepatocyte
2
putamen
2
skeletal muscle fiber
2
smooth muscle cell
2
subcutaneous adipose tissue
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
adipose tissue
1
amygdala
1
anterior cingulate cortex
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain pericyte
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellum
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
hepatic stellate cell
1
hypothalamus
1
islet of Langerhans
1
keratinocyte
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
left ventricle myocardium
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
medulla oblongata
1
mesothelial cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
nucleus accumbens
1
occipital lobe
1
omental fat pad
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pons
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right kidney
1
right lobe of liver
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
1
substantia nigra
1
superior temporal gyrus
1
thoracic aorta
1
thyroid follicular cell
1
type II pneumocyte
Organ
2
brain
1
epithelium
1
pancreas
Life stage
2
adult
Date released
2
May, 2020
1
March, 2020
Software used
13
macs
11
r
6
deseq2
6
samtools
2
deltasvm
2
qTLtools
1
chromhmm
1
encode-ccres
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
hiccups
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR061VHE
released
Annotation file set
: Variant allelic effects of putamen ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR055JGM
released
Annotation file set
: Fine-mapping results from CaVEMaN of putamen for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP