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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
57
heart
57
stomach
54
A549
48
brain
48
lung
45
small intestine
42
adrenal gland
42
kidney
42
placenta
39
common myeloid progenitor, CD34-positive
39
left lung
38
large intestine
33
right lung
33
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
27
CD4-positive, alpha-beta memory T cell
27
left kidney
27
renal cortex interstitium
27
renal pelvis
24
B cell
21
CD8-positive, alpha-beta memory T cell
21
liver
21
spinal cord
18
K562
18
adipose tissue
18
mononuclear cell
18
spleen
15
MCF-7
15
heart left ventricle
15
sigmoid colon
15
trophoblast cell
12
CD14-positive monocyte
12
T cell
12
body of pancreas
12
chorionic villus
12
endocrine pancreas
12
foreskin keratinocyte
12
neural progenitor cell
12
ovary
12
thyroid gland
12
transverse colon
9
HeLa-S3
9
Peyer's patch
9
T-helper 1 cell
9
T-helper 17 cell
9
T-helper 2 cell
9
caudate nucleus
9
chorion membrane
9
endometrium adenocarcinoma
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
fibroblast of lung
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
mammary gland epithelial cell
9
naive T cell
9
natural killer cell
9
neurosphere
9
regulatory T cell
9
retina
9
testis
9
tibial nerve
9
upper lobe of left lung
7
HepG2
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
T47D
6
adipocyte
6
angular gyrus
6
aorta
6
ascending aorta
6
breast epithelium
6
bronchial epithelial cell
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
endothelial cell of umbilical vein
6
epithelial cell of prostate
6
esophagus
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
foreskin fibroblast
6
frontal cortex
6
hepatocyte
6
keratinocyte
6
kidney tubule cell
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
mesenchymal stem cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
neutrophil
6
omental fat pad
6
pancreas
6
parathyroid adenoma
6
prostate gland
6
right atrium auricular region
6
right renal cortex interstitium
6
right renal pelvis
6
skeletal muscle myoblast
6
skin fibroblast
6
substantia nigra
6
temporal lobe
6
thoracic aorta
6
tibial artery
6
tongue
6
trophoblast
6
urinary bladder
6
vagina
3
8988T
3
A172
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO829
3
CWRU1
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
H1-hESC
3
H4
3
H54
3
H7-hESC
3
H9
3
HAP-1
3
HCT116
3
HEK293
3
HEK293T
3
HK-2 cell
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
HuH-7
3
HuH-7.5
3
IMR-90
3
KARPAS-422 cell
Life stage
3
embryonic
Date released
16
May, 2021
12
November, 2021
5
February, 2024
3
February, 2021
3
September, 2022
2
March, 2023
2
May, 2022
2
May, 2024
1
February, 2023
1
March, 2020
1
May, 2020
1
November, 2019
1
October, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
H1-hESC
organ_slims!
musculature of body
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR087ISF
released
Annotation file set
: Candidate regulatory elements for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234JGB
released
Annotation file set
: Target gene predictions for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708TJP
released
Annotation file set
: Chromatin states for BSS01612 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP