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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
differential activity
1
accessible chromatin
1
eQTL
1
target gene predictions
Annotation Category
5
Gene expression levels
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
5
single cell RNA-seq
2
snATAC-seq
1
RNA-seq
Available data
5
tsv
2
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
40
B cell
39
endothelial cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
fibroblast
28
macrophage
28
regulatory T cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
natural killer cell
20
mononuclear cell
20
smooth muscle cell
19
foreskin keratinocyte
19
pancreatic ductal cell
18
pancreatic beta cell
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
osteoblast
17
pancreatic alpha cell
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic acinar cell
16
pancreatic delta cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
erythroblast
11
glomerular visceral epithelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
hepatic stellate cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
mesenchymal stem cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
mast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
skeletal muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Plasma Cell
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
5
connective tissue
Life stage
5
adult
Date released
5
September, 2023
2
January, 2021
1
January, 2022
Software used
3
r
2
deseq2
1
cicero
1
macs
1
qTLtools
Lab
5
KPMP
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
5
KPMP
2
T1D
1
AMP
RFA
5
KPMP
2
T1D
1
AMP
biosample_term_name!
Plasmacytoid Dendritic Cell
organ_slims!
vasculature
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR878WKF
released
Annotation file set
: Differential activity annotation of Fibroblast between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR507GDT
released
Annotation file set
: Differential activity annotation of Fibroblast between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR873OXC
released
Annotation file set
: Gene expression annotation of Fibroblast of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR593GLE
released
Annotation file set
: Gene expression annotation of Fibroblast of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR470XKF
released
Annotation file set
: Gene expression annotation of Fibroblast of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR594UIG
released
Annotation file set
: CD8 T-cell anti-CD3-CD28 eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630CDR
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR069AHP
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of activated_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D