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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
22
K562
17
large intestine
12
GM12878
7
sigmoid colon
6
colon epithelial cell
6
peripheral blood mononuclear cell
6
transverse colon
5
GM06990
5
GM19240
5
HL-60
4
CMK
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
HAP-1
4
HT-29
4
OCI-LY7
4
RKO
4
RPMI8226
4
SW480
4
colonic mucosa
3
GM10847
3
GM12872
3
GM12891
3
GM12892
3
GM18526
3
GM18951
3
HCT-116 cell
3
HCT116
3
KBM-7
3
mucosa of rectum
3
peripheral blood stem cell
2
NAMALWA
2
NAMALWA cell
2
NB4
2
blood
2
muscle layer of colon
1
Caco-2
1
GM12874
1
Karpas-422
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
whole blood
Organ
5
blood
5
bodily fluid
0
large intestine
Life stage
1
unknown
Date released
3
February, 2021
September, 2022
1
June, 2020
1
October, 2022
Software used
3
macs
1
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
May, 2021
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR710IBN
released
Annotation file set
: Binding sites annotation for GM06990 (GM06990) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480OCS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM06990
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR131AOI
released
Annotation file set
: Histone modifications annotation for Blood GM06990 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR599ZRJ
released
Annotation file set
: Binding sites annotation for Blood GM06990 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR122MIZ
released
Annotation file set
: Accessible chromatin annotation for Blood GM06990 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP