Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
1
accessible chromatin
Annotation Category
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
1
ATAC-seq
Available data
bed bed3+
6
bed bed9
5
bigBed bed9
File set status
7
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
cell line
primary cell
Biosample term
28
islet of Langerhans
24
heart
23
kidney
21
brain
21
stomach
18
A549
18
lung
17
liver
16
adrenal gland
16
induced pluripotent stem cell
16
muscle of arm
16
small intestine
15
muscle of leg
15
placenta
14
subcutaneous adipose tissue
13
large intestine
13
left lung
13
muscle of back
12
adipose tissue
12
neural progenitor cell
11
EndoC_BH1
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
body of pancreas
10
caudate nucleus
10
heart left ventricle
9
H1-hESC
9
cerebellum
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
left kidney
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
substantia nigra
9
tibial artery
8
ascending aorta
8
spinal cord
8
spleen
6
Ammon's horn
6
K562
6
amygdala
6
anterior cingulate cortex
6
embryonic stem cell
6
heart right ventricle
6
hypothalamus
6
lymphoblastoid cell line
6
nucleus accumbens
6
ovary
6
right lobe of liver
6
skeletal muscle tissue
5
C1 segment of cervical spinal cord
5
MCF-7
5
aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
retina
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
4
angular gyrus
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
psoas muscle
4
right cardiac atrium
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
HeLa-S3
3
Peyer's patch
3
adipocyte
3
cartilage tissue
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
left renal cortex interstitium
3
pancreas
3
pancreatic ductal cell
3
prostate gland
3
right renal cortex interstitium
3
thoracic aorta
3
upper lobe of left lung
3
uterus
2
22Rv1
2
Brodmann (1909) area 46
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipose-derived stem cell
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
differentiating adipose-derived stem cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
iPSC derived cell line
2
left cardiac atrium
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
mesenchymal stem cell
2
midbrain
2
middle frontal gyrus
2
minor salivary gland
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
pons
2
right renal pelvis
2
smooth muscle cell
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12878
1
GM12891
1
GM12892
1
GM18507
1
GM19238
1
GM19239
1
GM19240
1
GM23248
Organ
1
blood
1
bodily fluid
Life stage
1
unknown
Date released
5
May, 2021
1
November, 2022
1
September, 2022
Software used
6
chromhmm
1
macs
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
Jurkat
biosample_type!
primary cell
files.file_type!
bed bed3+
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR810LZI
released
Annotation file set
: Chromatin states for BSS00454 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR103NWH
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR146BON
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR622ZAP
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148OGH
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044ECG
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP