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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
HiC
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
128
monocyte
69
heart
64
stomach
62
HeLa-S3
57
A549
56
brain
52
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
45
placenta
44
CD8-positive, alpha-beta T cell
44
muscle of leg
44
neural progenitor cell
41
large intestine
40
common myeloid progenitor, CD34-positive
40
liver
39
left lung
39
muscle of back
38
K562
37
B cell
37
thymus
36
islet of Langerhans
35
retina
34
endothelial cell
34
right lung
32
hematopoietic multipotent progenitor cell
31
hepatocyte
30
macrophage
29
fibroblast
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
heart left ventricle
26
spinal cord
24
regulatory T cell
smooth muscle cell
24
spleen
23
T cell
22
adipocyte
22
pericyte cell
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
21
pancreatic ductal cell
20
T-helper 1 cell
20
body of pancreas
20
coronary artery
20
pigmented layer of retina
19
HFFc6
19
T-helper 17 cell
19
caudate nucleus
18
MCF-7
18
right atrium auricular region
18
trophoblast cell
17
mononuclear cell
17
pancreas
17
pancreatic beta cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
natural killer cell
16
ovary
15
T-helper 2 cell
15
astrocyte
15
frontal cortex
15
mesenchymal stem cell
15
pancreatic acinar cell
15
pancreatic delta cell
15
subcutaneous adipose tissue
15
thyroid gland
14
cerebellum
14
endothelial cell of umbilical vein
14
excitatory neuron
14
pancreatic alpha cell
13
GM12878
13
HepG2
13
ascending aorta
13
embryonic stem cell
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
substantia nigra
13
transverse colon
12
chorionic villus
12
endocrine pancreas
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
muscle of trunk
12
retinal pigment epithelial cell
12
skeletal muscle satellite cell
11
Ammon's horn
11
aorta
11
erythroblast
11
fibroblast of dermis
11
keratinocyte
11
putamen
11
skeletal muscle myoblast
11
testis
10
H9
10
Peyer's patch
10
chorion membrane
10
foreskin fibroblast
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle tissue
9
cardiac muscle cell
9
colon epithelial cell
9
layer of hippocampus
9
osteoblast
9
skin fibroblast
9
upper lobe of left lung
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
endometrium adenocarcinoma
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
bronchial epithelial cell
7
choroid plexus epithelial cell
7
cingulate gyrus
7
colonic mucosa
7
esophagus
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
limb
7
lymphoblastoid cell line
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
duodenal mucosa
6
epithelial cell of prostate
6
induced pluripotent stem cell
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HAP-1
Organ
5
lymphoid tissue
Date released
3
September, 2022
February, 2021
1
February, 2024
1
June, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
smooth muscle cell
month_released!
February, 2021
organ_slims!
kidney
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR656RCL
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM18507
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886WMC
released
Annotation file set
: Candidate regulatory elements for BSS00462 GM18507 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR469HAD
released
Annotation file set
: Target gene predictions for BSS00462 GM18507 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR503YIU
released
Annotation file set
: Chromatin states for BSS00462 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR632NNZ
released
Annotation file set
: Accessible chromatin annotation for Blood GM18507 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP