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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ATAC-seq
1
snATAC-seq
Available data
9
bed bed3+
5
bigWig
3
tsv
1
bigBed narrowPeak
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
15
retina
13
pigmented layer of retina
10
hepatocyte
4
endothelial cell of hepatic sinusoid
4
islet of Langerhans
4
pancreatic alpha cell
4
pancreatic beta cell
3
pancreas
3
pancreatic delta cell
2
coronary artery
2
heart left ventricle
2
omental fat pad
2
pancreatic polypeptide-secreting cell
1
cardiac fibroblast
1
Ammon's horn
1
HepG2
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
endothelial cell
1
frontal cortex
1
globus pallidus
1
glomerular visceral epithelial cell
1
heart
1
hepatic stellate cell
1
kidney
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
osteoblast
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
pons
1
proximal tubule cells with injury markers
1
putamen
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
tibial artery
1
tibial nerve
Organ
5
pancreas
1
connective tissue
Life stage
5
adult
Date released
2
May, 2020
1
June, 2021
1
November, 2019
1
September, 2022
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935CED
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 43 non-diabetic and T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR364QCE
released
Annotation file set
: pancreatic stellate cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP