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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
chromatin state
1
eQTL
1
gene expression
Annotation Category
3
Target gene links
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
2
ChIP-seq
2
RNA-seq
Available data
5
bed bed3+
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
5
tissue
1
cell line
1
stem cell
Biosample term
24
endothelial cell
20
fibroblast
19
pericyte cell
16
macrophage
15
CD14-positive monocyte
15
kidney
14
smooth muscle cell
12
excitatory neuron
12
pancreatic alpha cell
11
pancreatic acinar cell
11
pancreatic beta cell
11
pancreatic delta cell
10
astrocyte
10
pancreatic ductal cell
10
pituitary stalk
9
adipocyte
8
induced pluripotent stem cell
7
CD8-positive, alpha-beta T cell
7
dendritic cell
7
pancreatic stellate cell
6
T cell
6
colon epithelial cell
6
erythroblast
6
keratinocyte
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
B cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cortical cell of adrenal gland
5
inhibitory neuron
5
natural killer cell
4
CD4-positive helper T cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
memory B cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
hepatocyte
3
megakaryocyte
3
mesothelial cell
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
schwann cell
3
skeletal muscle fiber
3
subcutaneous adipose tissue
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
EndoC_BH1
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
luteal cell
2
mammary epithelial cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
mesenchymal stem cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic polypeptide-secreting cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
Organ
3
adipose tissue
3
connective tissue
2
embryo
2
stomach
Life stage
2
adult
1
embryonic
Date released
3
May, 2021
2
August, 2017
2
February, 2021
Software used
3
abc
2
chromhmm
1
fastqtl
1
r
Lab
AMP-T2D consortium
3
Jesse Engreitz, Stanford University
2
Karen Mohlke, UNC
2
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
lab.title!
AMP-T2D consortium
month_released!
February, 2024
Showing 7 of 7 results
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Download
FileSet
DSR306BCP
released
Annotation file set
: Gene expression annotation of subcutaneous adipose tissue for GSE135134
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR965YTD
released
Annotation file set
: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR804392
released
Annotation file set
: ChromHMM 13-state model for Adipose
Lab:
Stephen Parker, UMich
Project:
AMP