Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
stem cell
Biosample term
21
heart
21
stomach
19
A549
19
CD14-positive monocyte
18
brain
16
adrenal gland
16
kidney
16
lung
16
muscle of arm
16
muscle of leg
16
small intestine
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
13
left lung
13
muscle of back
12
thymus
11
right lung
10
adipocyte
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
K562
8
heart left ventricle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
mature neutrophil
7
smooth muscle cell
7
spleen
7
trophoblast cell
6
MCF-7
6
dendritic cell
6
endothelial cell
6
endothelial cell of umbilical vein
6
keratinocyte
6
left cardiac atrium
6
mononuclear cell
6
sigmoid colon
5
CD14-positive, CD16-negative classical monocyte
5
body of pancreas
5
embryonic stem cell
5
fibroblast of lung
5
gastrocnemius medialis
5
heart right ventricle
5
muscle of trunk
5
ovary
5
psoas muscle
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD4-positive, alpha-beta T cell
4
CD8-positive, alpha-beta T cell
4
HeLa-S3
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
astrocyte
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
foreskin keratinocyte
4
hepatocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
natural killer cell
4
neural progenitor cell
4
pancreas
4
skeletal muscle myoblast
4
tibial nerve
3
GM12878
3
H1-hESC
3
HepG2
3
KARPAS-422 cell
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
breast epithelium
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
erythroblast
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
luminal epithelial cell of mammary gland
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
tibial artery
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
ESC derived cell line
2
H7-hESC
2
H9
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
germinal matrix
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
macrophage
2
mammary epithelial cell
2
mesendoderm
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
osteoblast
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
smooth muscle cell of the esophagus
2
tongue
2
trophoblast
2
type II pneumocyte
2
urinary bladder
2
uterus
2
vagina
1
8988T
Organ
3
embryo
Life stage
2
embryonic
Date released
1
August, 2017
1
May, 2021
October, 2022
1
September, 2022
Software used
10
r
3
macs
2
chromhmm
1
abc
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
month_released!
October, 2022
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP