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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
118
monocyte
59
stomach
57
heart
55
A549
48
brain
48
lung
48
muscle of arm
46
small intestine
44
adrenal gland
43
placenta
42
kidney
40
common myeloid progenitor, CD34-positive
40
muscle of leg
39
large intestine
39
left lung
39
muscle of back
34
CD8-positive, alpha-beta T cell
34
thymus
33
right lung
31
hematopoietic multipotent progenitor cell
30
right kidney
27
B cell
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
left kidney
27
renal cortex interstitium
27
renal pelvis
22
liver
22
spinal cord
21
CD8-positive, alpha-beta memory T cell
19
K562
19
adipose tissue
19
spleen
18
mononuclear cell
17
trophoblast cell
16
MCF-7
16
sigmoid colon
15
EndoC_BH1
15
heart left ventricle
13
body of pancreas
13
gastrocnemius medialis
13
muscle of trunk
13
psoas muscle
13
thyroid gland
13
transverse colon
12
T cell
12
chorionic villus
12
endocrine pancreas
12
foreskin keratinocyte
12
neural progenitor cell
11
T-helper 1 cell
11
T-helper 17 cell
11
T-helper 2 cell
11
embryonic stem cell
11
neutrophil
11
regulatory T cell
10
HeLa-S3
10
adipocyte
10
fibroblast of dermis
10
fibroblast of lung
10
natural killer cell
10
pituitary stalk
9
Peyer's patch
9
caudate nucleus
9
chorion membrane
9
endometrium adenocarcinoma
9
fibroblast of cardiac tissue
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
mammary gland epithelial cell
9
naive T cell
9
neurosphere
9
retina
9
skeletal muscle tissue
9
testis
9
tibial nerve
9
upper lobe of left lung
8
HepG2
7
SK-N-SH
7
breast epithelium
7
coronary artery
7
endothelial cell of umbilical vein
7
epithelial cell of prostate
7
foreskin fibroblast
7
hepatocyte
7
keratinocyte
7
mesenchymal stem cell
7
pancreas
7
skeletal muscle myoblast
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
T47D
6
angular gyrus
6
aorta
6
ascending aorta
6
bronchial epithelial cell
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
frontal cortex
6
kidney tubule cell
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
omental fat pad
6
parathyroid adenoma
6
prostate gland
6
right atrium auricular region
6
right renal cortex interstitium
6
right renal pelvis
6
skin fibroblast
6
stomach smooth muscle
6
substantia nigra
6
temporal lobe
6
thoracic aorta
6
tibial artery
6
tongue
6
trophoblast
6
urinary bladder
6
vagina
5
naive thymus-derived CD4-positive, alpha-beta T cell
4
A673
4
GM12878
4
H1-hESC
4
H7-hESC
4
H9
4
HAP-1
4
HT-29
4
IMR-90
4
KARPAS-422 cell
4
LoVo cell
4
MM.1S
4
OCI-LY7
4
PC-9
4
Panc1
4
astrocyte
4
bipolar neuron
4
cardiac muscle cell
4
iPS DF 19.11
4
islet of Langerhans
4
mesendoderm
4
osteoblast
4
smooth muscle cell
4
uterus
3
8988T
3
A172
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO829
3
CWRU1
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM08714
Organ
4
embryo
Life stage
3
embryonic
Date released
37
February, 2024
8
August, 2021
3
September, 2022
2
February, 2021
1
August, 2017
June, 2020
1
May, 2021
1
October, 2022
Software used
2
r
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
month_released!
June, 2020
organ_slims!
ovary
Showing 4 of 4 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP