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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
23
trophoblast cell
20
endothelial cell of umbilical vein
17
H1-hESC
16
chorionic villus
11
trophoblast
10
H9
10
endodermal cell
8
mesodermal cell
6
H7-hESC
6
HUES6
5
H4
5
HUES64
5
ectodermal cell
4
ELF-1
4
HUES48
4
UCSF-4
4
embryonic facial prominence
3
ES-I3
3
cardiac mesoderm primordium
3
hESC H9
3
primordial germ cell
2
HUES8
2
first pancreatic bud
2
vein endothelial cell
1
CyT49
1
H1
1
H7
1
cardiogenic mesoderm
1
embryonic fibroblast
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
morula
1
placental hematopoietic stem cell
1
trophoblast giant cell
1
whole blood
Disease term
3
glioma
Organ
5
embryo
0
vein
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
February, 2024
organ_slims!
spinal cord
Showing 5 of 5 results
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Download
FileSet
DSR828FIT
released
Annotation file set
: Candidate regulatory elements for BSS00481 H4 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985SXX
released
Annotation file set
: Target gene predictions for BSS00481 H4 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168KQA
released
Annotation file set
: Chromatin states for BSS00481 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR369LGF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE H4
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR655SUT
released
Annotation file set
: Accessible chromatin annotation for Neural H4 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP