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Schema
Citing CMDGA
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Annotation type
7
target gene predictions
Annotation Category
7
Target gene links
Annotation type Category
6
HiC
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
129
monocyte
64
HeLa-S3
61
A549
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
49
H1-hESC
44
islet of Langerhans
42
B cell
42
hematopoietic multipotent progenitor cell
41
endothelial cell
40
K562
40
liver
38
neural progenitor cell
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
hepatocyte
31
CD14-positive monocyte
31
adipose tissue
31
macrophage
30
kidney
stomach
29
adrenal gland
29
spleen
27
retina
26
heart left ventricle
26
regulatory T cell
25
MCF-7
25
adipocyte
24
body of pancreas
24
pancreatic ductal cell
24
tibial nerve
23
EndoC_BH1
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
natural killer cell
22
pericyte cell
22
sigmoid colon
21
T cell
21
T-helper 17 cell
21
caudate nucleus
21
foreskin keratinocyte
21
keratinocyte
21
smooth muscle cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
glomerular endothelial cell
20
mononuclear cell
20
pancreas
20
pigmented layer of retina
19
psoas muscle
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
pancreatic beta cell
18
right atrium auricular region
18
substantia nigra
17
T-helper 2 cell
17
heart
17
omental fat pad
17
pancreatic acinar cell
17
pancreatic alpha cell
17
thyroid gland
17
tibial artery
17
transverse colon
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
skeletal muscle tissue
15
CD4-positive, alpha-beta T cell
15
HepG2
15
ascending aorta
15
cerebellum
15
neutrophil
15
osteoblast
15
ovary
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
upper lobe of left lung
14
GM12878
14
endocrine pancreas
14
frontal cortex
14
mammary gland epithelial cell
14
small intestine
13
excitatory neuron
13
heart right ventricle
13
mesenchymal stem cell
13
prostate gland
13
putamen
13
skeletal muscle satellite cell
13
temporal lobe
12
Peyer's patch
12
aorta
12
bronchial epithelial cell
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
lung
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
Ammon's horn
11
erythroblast
11
lymphoblastoid cell line
11
mammary epithelial cell
10
22Rv1
10
brain
10
epithelial cell of prostate
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
testis
10
thoracic aorta
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiac muscle cell
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
vagina
8
B-lymphoblastoid cell line
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
thymus
7
GM12865
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin melanocyte
7
mature neutrophil
7
memory B cell
7
right lobe of liver
7
stomach smooth muscle
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
H9
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
WERI-Rb-1
6
WI38
6
anterior cingulate cortex
6
chondrocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
kidney glomerular epithelial cell
6
middle frontal gyrus
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
Organ
7
embryo
Life stage
embryonic
Date released
6
February, 2024
1
May, 2021
Software used
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
stomach
month_released!
June, 2020
relevant_life_stage!
embryonic
Showing 7 of 7 results
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Download
FileSet
DSR065MCS
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. primitive cardiomyocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR258GDM
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. mesoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991YDS
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. cardiac mesoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR247GQU
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. cardiac progenitors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR818GTP
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. ventricular cardiomyocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR447SRX
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. undifferentiated
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118KLN
released
Annotation file set
: enhancer-gene predicton of H9-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP