Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
gene expression
1
histone modifications
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
1
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
4
cell line
4
primary cell
1
in vitro differentiated cells
Biosample term
64
HeLa-S3
62
A549
53
H1-hESC
50
neural progenitor cell
43
hematopoietic multipotent progenitor cell
41
K562
26
MCF-7
23
EndoC_BH1
23
adipocyte
20
breast cancer cell
19
HFFc6
17
embryonic stem cell
16
GM12878
16
H9
16
induced pluripotent stem cell
12
lymphoblastoid cell line
12
neuroblastoma cell
11
cardiac muscle cell
11
cardiomyocytes
11
gastric cancer cell
10
22Rv1
10
Rhabdomyosarcoma
10
SK-N-DZ
10
SK-N-SH
10
diffuse intrinsic pontine glioma
10
endodermal cell
10
lymphocyte
10
mesenchymal stem cell
10
progenitor cell of endocrine pancreas
9
HEK293
9
IMR-90
9
NAMALWA cell
9
fibroblast cell line
9
liposarcoma
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
OCI-LY7
8
PC-9
8
SK-N-MC
8
T-cell acute lymphoblastic leukemia
8
WERI-Rb-1
8
cardiomyocytes (cardiac muscle cell)
8
endometrium adenocarcinoma
8
esophageal adenocarcinoma
8
extended pluripotent stem (EPS) cells
8
immortal human breast epithelial cell line cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LHCN-M2
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
NT2-D1 cell
7
PC-3
7
RPMI8226
7
RWPE1
7
SW480
7
T47D
7
WI38
7
chondrocyte
7
hESC cell
7
neuroblastoma cell line
7
neuronal stem cell
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
KBM-7
6
LNCAP
6
OCI-LY1
6
Rh-4 cell
6
SGBS preadipocytes
6
SJSA1
6
acute myeloid leukemia
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
iPSC derived cell line
6
mesendoderm
6
mesodermal cell
5
A172
5
A673
5
ACHN
5
Caki2
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
L1-S8
5
M059J
5
NB4
5
OCI-LY3
5
Panc1
5
RCC 7860
5
RPMI7951
5
RS4-11 cell
5
SJCRH30
5
SK-MEL-5
5
U937
5
VCaP cell
5
dendritic cell
5
dermal fibroblast
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
glioblastoma multiforme cancer stem cell
5
osteosarcoma
5
prostate cancer cell line
4
ACC112
4
AG08396 cell
4
B cell
4
C4-2B
4
COLO205
4
DND-41
4
DOHH2
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
GM23338
4
H54
4
HAC cell
4
HBMEC cell
4
HS-27A
4
HS-5
4
HS-SY-2 cell
4
HT1080
4
HUES48
4
KMS-11
4
KOPT-K1
4
L1-S8R
4
Loucy
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
NCI-H226 cell
4
NCI-H460 cell
4
NCI-H929
4
NHEK
4
Normal Human Astrocytes
4
PANC-1 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
RWPE2
4
SAEC
4
SK-N-SH_RA
4
SU-DHL-6
4
T-47D cell
4
Tumor-derived cell line
4
U-266 cell
4
U-87 MG
4
U2OS
4
UCSF-4
4
WI-38 cell
4
adipose-derived stem cell
4
colon adenocarcinoma
4
colon carcinoma
4
diffuse large B-cell lymphoma
4
ectodermal cell
4
glioblastoma cell
4
glioma cell
4
iPS DF 4.7 Cell Line
4
iPS DF 6.9
Organ
1
connective tissue
1
heart
Date released
2
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
liver
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR706NWN
released
Annotation file set
: Binding sites annotation for HAC cell (HAc) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR297QYL
released
Annotation file set
: Gene expression annotation of fibroblast ISL1-Lineage marker- on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401NRR
released
Annotation file set
: Histone modifications annotation for Neural HAc from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR668YYX
released
Annotation file set
: Binding sites annotation for Neural HAc from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR927SOI
released
Annotation file set
: Accessible chromatin annotation for Neural HAc from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP