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Schema
Citing CMDGA
Clear Filters
Annotation type
3
binding sites
2
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
49
small intestine
42
large intestine
18
sigmoid colon
15
transverse colon
10
Peyer's patch
9
colon epithelial cell
8
colonic mucosa
7
HT-29
7
duodenal mucosa
7
mucosa of rectum
6
SW480
6
enterocyte
6
muscle layer of colon
6
muscle layer of duodenum
5
HCT116
4
HCT-116 cell
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
RKO
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Crypt of Lieberkuhn
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
small intestine - terminal Ileum
Organ
7
intestine
7
large intestine
Date released
3
February, 2021
2
June, 2020
1
May, 2021
1
October, 2022
Software used
5
macs
1
abc
1
chromhmm
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
February, 2023
software_used.software.name!
encode-ccres
Showing 7 of 7 results
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Download
FileSet
DSR003UZC
released
Annotation file set
: Binding sites annotation for HCT-116 cell (HCT-116) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823SVP
released
Annotation file set
: Histone modifications annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR612HZP
released
Annotation file set
: Binding sites annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788ZGV
released
Annotation file set
: Binding sites annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR501BQN
released
Annotation file set
: Accessible chromatin annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP