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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
18
large intestine
18
small intestine
8
sigmoid colon
7
transverse colon
6
colon epithelial cell
6
enterocyte
5
HT-29
5
Peyer's patch
4
HCT-116 cell
4
RKO
4
SW480
4
colonic mucosa
4
enteric smooth muscle cell
3
HCT116
3
duodenal mucosa
3
mucosa of rectum
2
enterocyte of epithelium of small intestine
2
muscle layer of colon
2
muscle layer of duodenum
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
small intestine - terminal Ileum
Organ
4
intestine
4
large intestine
Life stage
2
adult
Date released
September, 2022
2
February, 2021
2
February, 2024
Software used
2
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
January, 2021
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR739FCW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LoVo
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP