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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
primary cell
8
cell line
Biosample term
58
HeLa-S3
49
heart
47
stomach
46
kidney
44
H1-hESC
40
brain
35
lung
35
muscle of arm
35
neural progenitor cell
33
adrenal gland
33
liver
33
retina
33
small intestine
32
muscle of leg
32
placenta
31
islet of Langerhans
30
large intestine
29
K562
28
muscle of back
26
A549
26
left lung
26
thymus
23
heart left ventricle
23
right lung
22
hematopoietic multipotent progenitor cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
spinal cord
21
spleen
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
18
left kidney
17
adipocyte
17
adipose tissue
17
embryonic stem cell
17
pancreas
tibial nerve
16
MCF-7
16
subcutaneous adipose tissue
15
EndoC_BH1
15
HepG2
15
caudate nucleus
15
coronary artery
14
GM12878
14
H9
13
body of pancreas
13
tibial artery
12
heart right ventricle
12
lymphoblastoid cell line
12
neuroblastoma cell
12
putamen
12
right atrium auricular region
12
substantia nigra
11
omental fat pad
11
ovary
11
psoas muscle
11
sigmoid colon
10
Rhabdomyosarcoma
10
gastric cancer cell
10
testis
10
thyroid gland
9
Ammon's horn
9
ascending aorta
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
layer of hippocampus
9
left cardiac atrium
9
liposarcoma
9
muscle of trunk
9
transverse colon
9
upper lobe of left lung
8
B-lymphoblastoid cell line
8
Peyer's patch
8
cardiac muscle cell
8
cerebellum
8
fibroblast cell line
8
gastrocnemius medialis
8
pituitary stalk
8
prostate gland
8
skeletal muscle tissue
7
HEK293
7
IMR-90
7
Jurkat
7
aorta
7
esophageal adenocarcinoma
7
left renal cortex interstitium
7
left renal pelvis
7
lymphocyte
7
mesendoderm
7
neuronal stem cell
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
MM.1S
6
OCI-LY7
6
PC-9
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-MC
6
SK-N-SH
6
T-cell acute lymphoblastic leukemia
6
breast epithelium
6
chondrocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mesenchymal stem cell
6
neuroblastoma cell line
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
LHCN-M2
5
LoVo cell
5
MG63
5
NAMALWA cell
5
NT2-D1 cell
5
PC-3
5
RPMI8226
5
RWPE1
5
SK-N-DZ
5
SW480
5
WERI-Rb-1
5
WI38
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
midbrain
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
thoracic aorta
4
B cell
4
C1 segment of cervical spinal cord
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT116
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
KBM-7
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY1
4
PANC-1 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
RS4-11 cell
4
SJSA1
4
SK-N-SH_RA
4
U937
4
angular gyrus
4
anterior cingulate cortex
4
cartilage tissue
Organ
7
kidney
Life stage
3
embryonic
Date released
4
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
1
September, 2022
Software used
3
macs
2
chromhmm
2
encode-ccres
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
tibial nerve
biosample_type!
primary cell
software_used.software.name!
r
Showing 8 of 8 results
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Download
FileSet
DSR035EYO
released
Annotation file set
: Binding sites annotation for HEK293 (HEK293) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR169WOI
released
Annotation file set
: Chromatin states for BSS00526 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329YQT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HEK293
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR857JQR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HEK293
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412PEI
released
Annotation file set
: Histone modifications annotation for Kidney 293 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496NDA
released
Annotation file set
: Binding sites annotation for Kidney 293 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR837LJK
released
Annotation file set
: Accessible chromatin annotation for Kidney 293 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP