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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
56
kidney
48
adrenal gland
32
right kidney
30
renal pelvis
29
renal cortex interstitium
27
left kidney
9
kidney tubule cell
8
epithelial cell of proximal tubule
8
glomerular endothelial cell
8
glomerular visceral epithelial cell
8
left renal cortex interstitium
8
left renal pelvis
8
right renal cortex interstitium
8
right renal pelvis
7
kidney glomerular epithelial cell
7
renal cortical epithelial cell
6
cortical cell of adrenal gland
6
kidney epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney capillary endothelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
renal cell carcinoma
3
G401
3
HEK293T
2
cortex of kidney
2
kidney distal convoluted tubule epithelial cell
2
metanephros
2
renal principal cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
1
left kidney
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
chromaffin cell of adrenal gland
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
ureteric bud
Organ
5
kidney
0
adrenal gland
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
October, 2022
Software used
2
chromhmm
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
February, 2021
organ_slims!
penis
Showing 5 of 5 results
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Download
FileSet
DSR035EYO
released
Annotation file set
: Binding sites annotation for HEK293 (HEK293) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR905RCW
released
Annotation file set
: Candidate regulatory elements for BSS00526 HEK293 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731FMO
released
Annotation file set
: Target gene predictions for BSS00526 HEK293 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR169WOI
released
Annotation file set
: Chromatin states for BSS00526 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR837LJK
released
Annotation file set
: Accessible chromatin annotation for Kidney 293 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP