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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
89
monocyte
22
retina
21
A549
20
common myeloid progenitor, CD34-positive
20
pigmented layer of retina
18
CD8-positive, alpha-beta T cell
17
hematopoietic multipotent progenitor cell
15
liver
14
B cell
14
endothelial cell of hepatic sinusoid
13
tibial nerve
12
adrenal gland
12
body of pancreas
12
islet of Langerhans
12
omental fat pad
12
subcutaneous adipose tissue
11
caudate nucleus
11
hepatocyte
11
spleen
11
stomach
10
ascending aorta
10
heart left ventricle
10
pancreas
9
MCF-7
9
adipose tissue
9
coronary artery
9
natural killer cell
9
substantia nigra
9
tibial artery
8
CD4-positive, alpha-beta T cell
8
cerebellum
8
gastrocnemius medialis
8
putamen
8
right atrium auricular region
8
sigmoid colon
8
thyroid gland
8
transverse colon
7
Ammon's horn
7
K562
7
Peyer's patch
7
aorta
7
frontal cortex
7
temporal lobe
7
upper lobe of left lung
6
CD14-positive monocyte
6
angular gyrus
6
endocrine pancreas
6
esophagus squamous epithelium
6
layer of hippocampus
6
lower leg skin
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
ovary
6
psoas muscle
6
right lobe of liver
5
CD8-positive, alpha-beta memory T cell
5
HeLa-S3
5
breast epithelium
5
endothelial cell
5
esophagus muscularis mucosa
5
fibroblast
5
gastroesophageal sphincter
5
kidney
5
mature neutrophil
5
mononuclear cell
5
neutrophil
5
parathyroid adenoma
5
skeletal muscle tissue
5
subcutaneous abdominal adipose tissue
5
thoracic aorta
4
C1 segment of cervical spinal cord
4
T cell
4
T-helper 1 cell
4
adipocyte
4
amygdala
4
anterior cingulate cortex
4
cartilage tissue
4
cerebellum (Hemisphere)
4
cingulate gyrus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
duodenal mucosa
4
esophagus
4
fibroblast of breast
4
gastrocnemius medialis(Muscle - Skeletal)
4
globus pallidus
4
glutamatergic neuron
4
hepatic stellate cell
4
hypothalamus
4
kidney glomerular epithelial cell
4
kidney tubule cell
4
left ventricle myocardium
4
macrophage
4
middle frontal gyrus
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nucleus accumbens
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
prostate gland
4
right cardiac atrium
4
small intestine
4
stomach smooth muscle
4
testis
4
vagina
3
CD4-positive, alpha-beta memory T cell
3
GM12878
3
LNCaP clone FGC
3
MCF 10A
3
T-helper 2 cell
3
T47D
3
cerebellar cortex
3
dermis blood vessel endothelial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
fibroblast of lung
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
lung
3
mast cell
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
pancreatic delta cell
3
pons
3
regulatory T cell
3
skeletal muscle satellite cell
3
smooth muscle cell
3
superior temporal gyrus
3
suprapubic skin
3
uterus
2
cardiac fibroblast
2
A172
2
ACC112
2
ACHN
2
AG10803
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
Brodmann (1909) area 46
2
C4-2B
2
CD14-positive, CD16-negative classical monocyte
2
Caki2
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
DOHH2
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
GM04503
2
GM04504
2
GM23248
2
GM23338
2
Glomerular Capillary Endothelial Cell
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
KBM-7
2
KMS-11
2
LHCN-M2
2
LNCAP
2
Loucy
2
Lymphatic Endothelial Cell
2
M059J
2
M2 Macrophage
2
MM.1S
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
Disease term
1
acute promyelocytic leukemia
Organ
2
blood
2
bodily fluid
Life stage
2
adult
Date released
1
February, 2021
1
September, 2022
Software used
r
1
chromhmm
1
encode-ccres
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
software_used.software.name!
r
Showing 2 of 2 results
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Download
FileSet
DSR291VRD
released
Annotation file set
: Chromatin states for BSS00702 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR321NFU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HL-60
Lab:
AMP-T2D consortium
Project:
AMP