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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
18
large intestine
18
small intestine
8
sigmoid colon
7
transverse colon
6
colon epithelial cell
6
enterocyte
5
HT-29
5
Peyer's patch
4
HCT-116 cell
4
RKO
4
SW480
colonic mucosa
4
enteric smooth muscle cell
3
HCT116
3
duodenal mucosa
3
mucosa of rectum
2
enterocyte of epithelium of small intestine
2
muscle layer of colon
2
muscle layer of duodenum
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
small intestine - terminal Ileum
Organ
5
intestine
5
large intestine
Life stage
1
adult
Date released
3
February, 2021
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
colonic mucosa
month_released!
September, 2022
organ_slims!
vagina
Showing 5 of 5 results
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Download
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP