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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
131
monocyte
89
heart
86
stomach
81
kidney
72
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
45
islet of Langerhans
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
41
endothelial cell
40
renal cortex interstitium
40
renal pelvis
38
retina
37
hepatocyte
36
left kidney
35
spinal cord
34
spleen
33
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
macrophage
31
CD14-positive monocyte
31
adipose tissue
28
regulatory T cell
26
MCF-7
26
adipocyte
25
pancreatic ductal cell
25
smooth muscle cell
23
EndoC_BH1
23
T-helper 1 cell
23
natural killer cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
body of pancreas
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pancreas
22
pericyte cell
22
tibial nerve
21
T-helper 17 cell
21
caudate nucleus
21
keratinocyte
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
subcutaneous adipose tissue
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic beta cell
18
thyroid gland
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
substantia nigra
17
testis
17
tibial artery
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
mammary gland epithelial cell
15
neutrophil
15
omental fat pad
15
pancreatic delta cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
H9
14
ascending aorta
14
endocrine pancreas
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
12
cerebellum
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
putamen
12
skeletal muscle satellite cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
lymphocyte
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
glomerular visceral epithelial cell
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
mature neutrophil
Disease term
3
colorectal adenocarcinoma
Organ
8
intestine
8
large intestine
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
mature neutrophil
month_released!
February, 2020
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP