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Citing CMDGA
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Annotation type
2
candidate regulatory elements
2
histone modifications
2
target gene predictions
1
accessible chromatin
1
binding sites
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
0
tissue
Biosample term
69
heart
67
stomach
65
kidney
60
HeLa-S3
55
brain
52
lung
51
H1-hESC
51
muscle of arm
48
adrenal gland
48
small intestine
46
placenta
43
A549
43
large intestine
43
muscle of leg
41
islet of Langerhans
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
34
right lung
33
K562
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spleen
27
left kidney
27
spinal cord
26
heart left ventricle
25
adipose tissue
23
EndoC_BH1
21
tibial nerve
20
MCF-7
20
body of pancreas
20
breast cancer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
HFFc6
18
pancreas
17
caudate nucleus
17
coronary artery
17
ovary
17
right atrium auricular region
17
sigmoid colon
15
H9
15
omental fat pad
15
psoas muscle
15
substantia nigra
15
transverse colon
14
HepG2
14
gastrocnemius medialis
14
testis
14
thyroid gland
14
tibial artery
13
GM12878
13
frontal cortex
13
heart right ventricle
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
Peyer's patch
11
chorionic villus
10
Rhabdomyosarcoma
10
endocrine pancreas
10
gastric cancer cell
10
left renal cortex interstitium
10
right renal pelvis
9
left renal pelvis
9
liposarcoma
9
lymphocyte
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
pituitary stalk
8
trophoblast
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-DZ
7
SK-N-SH
7
amygdala
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
lower leg skin
7
temporal lobe
7
thoracic aorta
6
CMK
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HL-60
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
PC-3
6
RWPE1
6
Rh-4 cell
6
SK-N-MC
6
SW480
6
WI38
6
anterior cingulate cortex
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
eye
6
globus pallidus
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
right renal cortex interstitium
6
tongue
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
Caco-2 cell
5
Chondroid Chordoma
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
GM12875
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
NT2-D1 cell
5
OCI-LY1
5
RPMI8226
5
SJSA1
5
acute myeloid leukemia
5
angular gyrus
5
chorion membrane
5
cingulate gyrus
5
colonic mucosa
5
esophageal adenocarcinoma
5
limb
5
prostate cancer cell line
5
right lobe of liver
5
urinary bladder
5
vagina
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM08714
4
GM12891
4
GM12892
4
H4
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
L1-S8
4
M059J
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
OCI-LY3
4
Panc1
Disease term
2
colorectal adenocarcinoma
Organ
7
intestine
7
large intestine
Life stage
3
adult
Date released
4
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
4
macs
2
r
1
abc
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
software_used.software.name!
chromhmm
Showing 8 of 8 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR064CXA
released
Annotation file set
: Histone modifications annotation for Lung Lung_adenocarcinoma_cell_lines from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP