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Schema
Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
16
sigmoid colon
16
transverse colon
13
Peyer's patch
8
colonic mucosa
8
duodenal mucosa
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
small intestine
4
HCT116
4
HT-29
4
SW480
3
rectum smooth muscle tissue
1
Caco-2
1
LoVo
1
colon - sigmoid
1
colon - transverse
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
3
colorectal adenocarcinoma
Organ
4
intestine
4
large intestine
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
April, 2019
Showing 4 of 4 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP