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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
63
small intestine
56
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
3
colorectal adenocarcinoma
Organ
8
intestine
8
large intestine
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
mammary gland
Showing 8 of 8 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP