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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
35
fibroblast
32
adipose tissue
29
adipocyte
24
pericyte cell
21
coronary artery
21
subcutaneous adipose tissue
20
endothelial cell of umbilical vein
19
foreskin fibroblast
19
mesenchymal stem cell
19
tibial artery
18
omental fat pad
17
fibroblast of cardiac tissue
17
osteoblast
16
ascending aorta
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
13
aorta
12
fibroblast of dermis
12
hepatic stellate cell
12
skin fibroblast
11
thoracic aorta
10
dermis blood vessel endothelial cell
10
pancreatic stellate cell
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
7
GM23248
7
chondrocyte
7
pulmonary artery endothelial cell
7
smooth muscle cell of the coronary artery
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Mesangial Cell
5
Peritubular Capillary Endothelial Cell
5
brain microvascular endothelial cell
5
cardiac fibroblast
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
kidney capillary endothelial cell
4
HT1080
4
aortic endothelial cell
4
bone tissue
4
brain pericyte
4
fibroblast of gingiva
4
mesangial cell
4
pancreatic endothelial cell
4
preadipocyte
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
adipose tissue derived mesenchymal stem cell
2
articular chondrocyte
2
capillary endothelial cell
2
columnar chondrocyte
2
endothelial cell of coronary artery
2
extracellular matrix secreting cell
2
fat cell
2
luteal cell
2
stromal cell
2
vein endothelial cell
1
brain microvascular endothelial cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
abdominal aorta artery
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
adult endothelial progenitor cell
1
aorta wall
1
aortic smooth muscle cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
circle of Willis
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
placental villus capillary endothelial cell
1
quiescent pancreatic stellate cell
1
white adipose cell
1
white adipose tissue
1
whole blood
Disease term
3
fibrosarcoma
Organ
4
connective tissue
0
blood vessel
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
files.file_type!
txt
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR838AAN
released
Annotation file set
: Candidate regulatory elements for BSS00709 HT1080 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810CKU
released
Annotation file set
: Target gene predictions for BSS00709 HT1080 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488OIF
released
Annotation file set
: Chromatin states for BSS00709 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR542MAT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT1080
Lab:
AMP-T2D consortium
Project:
AMP