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Annotation type
2
binding sites
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
2636
whole blood
131
monocyte
69
heart
67
stomach
65
kidney
61
HeLa-S3
55
brain
53
H1-hESC
52
lung
51
CD8-positive, alpha-beta T cell
51
muscle of arm
48
adrenal gland
48
small intestine
47
liver
47
neural progenitor cell
46
placenta
45
islet of Langerhans
44
A549
44
endothelial cell
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
B cell
39
left lung
38
macrophage
37
retina
37
thymus
36
hepatocyte
35
K562
35
fibroblast
34
right lung
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
28
spleen
27
CD14-positive monocyte
27
adipocyte
27
left kidney
26
heart left ventricle
26
smooth muscle cell
26
subcutaneous adipose tissue
25
adipose tissue
25
pancreatic ductal cell
25
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
natural killer cell
23
pericyte cell
22
epithelial cell of proximal tubule
21
MCF-7
21
tibial nerve
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
19
T-helper 1 cell
19
caudate nucleus
19
keratinocyte
19
pancreas
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreatic beta cell
17
coronary artery
17
foreskin fibroblast
17
ovary
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
astrocyte
16
cardiac muscle cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
mesenchymal stem cell
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
retinal pigment epithelial cell
15
transverse colon
14
GM12878
14
gastrocnemius medialis
14
mononuclear cell
14
testis
14
thyroid gland
14
tibial artery
13
H9
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
frontal cortex
13
heart right ventricle
13
layer of hippocampus
13
neutrophil
13
putamen
13
skeletal muscle myoblast
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
embryonic stem cell
12
fibroblast of lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
erythroblast
11
mammary gland epithelial cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
hepatic stellate cell
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
choroid plexus epithelial cell
8
esophagus
8
fibroblast cell line
8
mast cell
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
8
trophoblast
7
GM12865
7
HEK293
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
lower leg skin
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BJ cell
6
Chondroid Chordoma
6
GM06990
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
aorta wall
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
Organ
8
lung
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
Collection Tags
3
ChIP-Atlas
2
ENCODE
2
EpiMap
1
DGA
RFA
8
AMP
files.file_type!
bed bed9
Showing 8 of 8 results
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Download
FileSet
DSR195QHJ
released
Annotation file set
: Binding sites annotation for IMR-90 (IMR90) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR446ATU
released
Annotation file set
: Candidate regulatory elements for BSS00720 IMR-90 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772ORX
released
Annotation file set
: Target gene predictions for BSS00720 IMR-90 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249FPB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE IMR-90
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR843YYZ
released
Annotation file set
: Histone modifications annotation for Lung IMR-90 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR268PHG
released
Annotation file set
: Binding sites annotation for Lung IMR-90 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895REE
released
Annotation file set
: enhancer-gene predicton of IMR90-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR879CGQ
released
Annotation file set
: Accessible chromatin annotation for Lung IMR-90 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP