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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
histone modifications
1
candidate regulatory elements
1
gene expression
Annotation Category
5
cis-regulatory elements
1
Gene expression levels
Annotation type Category
5
ChIP-seq
1
DNase-seq
1
scRNA-seq
Available data
5
bed bed3+
1
tsv
1
txt
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
5
cell line
1
primary cell
Biosample term
38
neural progenitor cell
33
kidney
22
heart
22
stomach
20
breast cancer cell
17
brain
17
islet of Langerhans
17
lung
17
muscle of arm
16
epithelial cell of proximal tubule
15
liver
15
muscle of back
15
placenta
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
glomerular endothelial cell
14
large intestine
14
small intestine
13
left lung
13
muscle of leg
12
neuroblastoma cell
11
cardiomyocytes
11
endothelial cell
11
gastric cancer cell
11
hematopoietic multipotent progenitor cell
10
H1-hESC
10
diffuse intrinsic pontine glioma
10
renal cortex interstitium
10
right lung
10
thymus
9
Rhabdomyosarcoma
9
cardiac muscle cell
9
foreskin keratinocyte
9
liposarcoma
9
mammary epithelial cell
9
renal pelvis
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta T cell
8
MCF-7
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
foreskin fibroblast
8
hepatocyte
8
induced pluripotent stem cell
8
neuronal stem cell
8
right kidney
8
spleen
7
B cell
7
B-lymphoblastoid cell line
7
adipose tissue
7
fibroblast cell line
7
hESC cell
7
heart left ventricle
7
keratinocyte
7
spinal cord
7
subcutaneous adipose tissue
6
Chondroid Chordoma
6
H9
6
acute myeloid leukemia
6
bronchial epithelial cell
6
glomerular visceral epithelial cell
6
kidney interstitial cell
6
left kidney
6
neuroblastoma cell line
5
A549
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
HepG2
5
adipocyte
5
cartilage tissue
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
esophageal squamous cell carcinoma
5
foreskin melanocyte
5
glioblastoma multiforme cancer stem cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
natural killer cell
5
osteoblast
5
osteosarcoma
5
prostate cancer cell line
5
testis
4
22Rv1
4
CD14-positive monocyte
4
HEK293
4
HS-SY-2 cell
4
Jurkat
4
LNCAP
4
Mantle cell lymphoma
4
Peyer's patch
4
RS4-11 cell
4
Rh-4 cell
4
T-cell
4
Th1 cell
4
Tumor-derived cell line
4
WI38
4
body of pancreas
4
bone tissue
4
chorionic villus
4
colon adenocarcinoma
4
dermal fibroblast
4
diffuse large B-cell lymphoma
4
erythroid progenitor cell
4
esophagus squamous epithelium
4
gastroesophageal sphincter
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
nephron progenitor
4
pancreas
4
right renal pelvis
4
sigmoid colon
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
COLO205
3
GM06990
3
GM12864
3
GM12865
3
GM12873
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
IMR-90
3
Ishikawa
3
K562
3
LHCN-M2
3
MCF 10A
3
MG63
3
MM.1S
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RKO
3
RPMI8226
3
RWPE1
3
S-shaped body
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
T-helper 1 cell
3
T-helper 17 cell
3
WERI-Rb-1
3
adult endothelial progenitor cell
3
aorta
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
cardiac precursors (cardiac muscle cell)
3
caudate nucleus
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
dermis blood vessel endothelial cell
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
endodermal cell
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
fibroblast
3
fibroblast of lung
3
fibroblast of mammary gland
3
gastrocnemius medialis
3
heart right ventricle
3
hematopoietic cell
3
hepatic stellate cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney cortex collecting duct principal cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
leukemic stem cell
3
lower leg skin
3
lymphoblastoid cell line
3
melanoma
3
skeletal muscle tissue
3
trophoblast cell
2
143B
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
Organ
3
blood
3
bodily fluid
Life stage
2
adult
Date released
19
February, 2024
18
September, 2022
10
November, 2021
7
January, 2022
5
February, 2021
3
May, 2021
2
January, 2021
2
June, 2020
1
April, 2020
1
August, 2017
1
August, 2021
1
February, 2023
1
May, 2020
1
May, 2022
1
October, 2022
Software used
4
macs
1
encode-ccres
1
r
1
seurat
Lab
5
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
6
AMP
RFA
5
AMP
1
AMP2
biosample_term_name!
OCI-LY1
Showing 6 of 6 results
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Download
FileSet
DSR016KBK
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for macrophage
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR396CCK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE K562
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR242ZSZ
released
Annotation file set
: Histone modifications annotation for Blood Macrophages from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR013BOE
released
Annotation file set
: Binding sites annotation for Blood Macrophages from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP