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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
histone modifications
1
binding sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
cell line
2
tissue
Biosample term
105
monocyte
33
CD8-positive, alpha-beta T cell
30
neural progenitor cell
24
retina
20
breast cancer cell
20
pigmented layer of retina
19
endothelial cell
19
fibroblast
14
macrophage
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
12
hepatocyte
12
neuroblastoma cell
11
embryonic stem cell
11
gastric cancer cell
11
kidney
11
pancreatic ductal cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
diffuse intrinsic pontine glioma
9
astrocyte
9
keratinocyte
9
liposarcoma
9
retinal pigment epithelial cell
8
HepG2
8
T-cell acute lymphoblastic leukemia
8
adipocyte
8
esophageal adenocarcinoma
8
fibroblast cell line
8
neuroblastoma cell line
8
pancreatic beta cell
8
pericyte cell
8
smooth muscle cell
7
B cell
7
B-lymphoblastoid cell line
T cell
7
acute myeloid leukemia
7
chondrocyte
7
fibroblast of cardiac tissue
7
hESC cell
7
islet of Langerhans
7
liver
7
mammary epithelial cell
7
osteoblast
7
pancreatic acinar cell
6
Chondroid Chordoma
6
Rh-4 cell
6
glioblastoma multiforme cancer stem cell
6
glutamatergic neuron
6
lymphoblastoid cell line
6
melanoma
6
neuronal stem cell
5
Ewing sarcoma
5
Jurkat
5
MCF-7
5
RS4-11 cell
5
Th1 cell
5
brain
5
bronchial epithelial cell
5
dermal fibroblast
5
diffuse large B-cell lymphoma
5
erythroblast
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
heart
5
hepatic stellate cell
5
inhibitory neuron
5
mesenchymal stem cell
5
osteosarcoma
5
prostate cancer cell line
4
B-lymphocyte
4
COLO205
4
HS-SY-2 cell
4
Mantle cell lymphoma
4
SGBS preadipocytes
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
adipose-derived stem cell
4
aortic endothelial cell
4
cardiac muscle cell
4
colon adenocarcinoma
4
erythroid cell
4
erythroid progenitor cell
4
glial cell
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
lung fibroblast cell line
4
mammary gland epithelial cell
4
melanoma cell
4
natural killer cell
4
pancreas
4
pancreatic alpha cell
4
pancreatic delta cell
4
regulatory T cell
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
786-O cell
3
A-673 cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
GM23248
3
H1-hESC
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
HT-29
3
HeLa cell
3
HuH-7
3
IMR-90
3
Ishikawa
3
K562
3
KARPAS-422 cell
3
Kasumi-1
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
MDA-MB-231 cell
3
MG63
3
MM.1S
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY7
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
PC-9
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T-47D cell
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
aortic adventitial fibroblast
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
3
colon epithelial cell
3
cortex of kidney
3
cortical cell of adrenal gland
3
enterocyte
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
foreskin keratinocyte
3
foreskin melanocyte
3
gabaergic neuron
3
hESC H9
3
hematopoietic cell
3
hematopoietic multipotent progenitor cell
3
iPS DF 4.7 Cell Line
Organ
3
blood
3
bodily fluid
2
brain
Date released
3
February, 2021
2
June, 2020
January, 2020
Software used
14
r
9
chromhmm
5
macs
2
encode-ccres
2
qTLtools
1
abc
1
deltasvm
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
T cell
month_released!
January, 2020
Showing 5 of 5 results
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Download
FileSet
DSR510FWG
released
Annotation file set
: Histone modifications annotation for Neural Putamen from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR509CLD
released
Annotation file set
: Accessible chromatin annotation for Neural Putamen from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191JBF
released
Annotation file set
: Accessible chromatin annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP