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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
21
EndoC_BH1
20
pigmented layer of retina
11
breast epithelium
11
esophagus squamous epithelium
7
MG63
6
OCI-LY1
6
SJSA1
6
pancreatic ductal cell
6
retinal pigment epithelial cell
5
L1-S8
5
OCI-LY3
4
HS-27A
4
HS-5
4
KMS-11
4
L1-S8R
4
NCI-H929
4
U2OS
4
bone tissue
4
femur
4
hepatocyte
4
keratinocyte
3
arm bone
3
choroid plexus epithelial cell
3
colon epithelial cell
3
epithelial cell of prostate
3
foreskin keratinocyte
3
hepatocyte(AFP)
3
leg bone
3
mammary gland epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
endothelial cell
2
glomerular visceral epithelial cell
2
kidney epithelium
2
pancreatic acinar cell
2
vein endothelial cell
1
breast - mammary tissue
1
corneal epithelium
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
esophagus - mucosa
1
glomerular epithelium
1
intermediate endothelial cell
1
intestinal epithelium
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
type B pancreatic cell
1
urothelial cell
Organ
5
bone element
0
epithelium
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
primary cell
files.file_type!
bed gappedPeak
Showing 5 of 5 results
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Download
FileSet
DSR787XSO
released
Annotation file set
: Candidate regulatory elements for BSS01107 L1-S8 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR160KKH
released
Annotation file set
: Target gene predictions for BSS01107 L1-S8 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR960WNO
released
Annotation file set
: Chromatin states for BSS01107 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR293YZV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE L1-S8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833UUW
released
Annotation file set
: Accessible chromatin annotation for Blood L1-S8 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP