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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
differential activity
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
bed bed9
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
cell line
2
tissue
Biosample term
50
muscle of arm
44
muscle of leg
39
muscle of back
17
psoas muscle
14
gastrocnemius medialis
13
muscle of trunk
12
skeletal muscle satellite cell
11
skeletal muscle tissue
9
skeletal muscle fiber
8
esophagus muscularis mucosa
7
stomach smooth muscle
7
type I muscle cell
7
type II muscle cell
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
skeletal muscle cell
4
A673
4
LHCN-M2
4
SJCRH30
4
rectum smooth muscle tissue
3
gastroesophageal sphincter
2
hindlimb muscle
2
muscle of leg
2
myotube
2
skeletal muscle
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
Disease term
1
coronary artery disease
Organ
6
musculature of body
Life stage
4
adult
Date released
February, 2021
3
September, 2022
1
August, 2017
1
February, 2024
1
June, 2020
Software used
2
chromhmm
2
r
1
deseq2
1
macs
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
month_released!
February, 2021
organ_slims!
penis
Showing 6 of 6 results
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Download
FileSet
DSR712UEE
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for skeletal muscle (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR417GJT
released
Annotation file set
: Candidate regulatory elements for BSS01155 LHCN-M2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR757MOL
released
Annotation file set
: Target gene predictions for BSS01155 LHCN-M2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR599EMY
released
Annotation file set
: Chromatin states for BSS01155 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR513VRE
released
Annotation file set
: Accessible chromatin annotation for Muscle LHCN-M2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR344424
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP