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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
131
monocyte
55
HeLa-S3
51
CD8-positive, alpha-beta T cell
51
H1-hESC
44
endothelial cell
44
islet of Langerhans
39
neural progenitor cell
37
kidney
35
fibroblast
35
macrophage
32
hepatocyte
31
heart
31
retina
29
stomach
27
liver
25
pancreatic ductal cell
24
smooth muscle cell
23
B cell
23
EndoC_BH1
23
K562
23
adipocyte
23
brain
21
pericyte cell
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
muscle of arm
18
HFFc6
18
glomerular endothelial cell
18
placenta
18
regulatory T cell
18
small intestine
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
heart left ventricle
16
induced pluripotent stem cell
16
muscle of leg
16
natural killer cell
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
14
T-helper 1 cell
14
astrocyte
14
cardiac muscle cell
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
H9
13
caudate nucleus
13
coronary artery
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
tibial nerve
12
adipose tissue
12
embryonic stem cell
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T cell
11
T-helper 17 cell
11
body of pancreas
11
erythroblast
11
omental fat pad
11
putamen
10
MCF-7
10
Rhabdomyosarcoma
10
endothelial cell of umbilical vein
10
frontal cortex
10
gastric cancer cell
10
mesenchymal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
9
Ammon's horn
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
ovary
9
testis
9
tibial artery
8
A549
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
hepatic stellate cell
8
left cardiac atrium
8
mast cell
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
8
skeletal muscle satellite cell
7
CD4-positive helper T cell
7
Jurkat
7
amygdala
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
memory B cell
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
sigmoid colon
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
KARPAS-422 cell
5
Non-Classical Monocyte
5
PC-9
5
SGBS preadipocytes
5
T-helper 2 cell
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
dendritic cell
Organ
6
prostate gland
Life stage
2
adult
Date released
4
February, 2021
1
June, 2020
1
May, 2021
Software used
3
macs
2
encode-ccres
1
abc
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
files.file_type!
bed bed9
month_released!
September, 2022
software_used.software.name!
peer
Showing 6 of 6 results
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Download
FileSet
DSR718TWX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LNCAP
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543HLI
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LNCAP
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835IJD
released
Annotation file set
: Histone modifications annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144WDI
released
Annotation file set
: Binding sites annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR563FIF
released
Annotation file set
: enhancer-gene predicton of LNCAP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR475PYM
released
Annotation file set
: Accessible chromatin annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP