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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
128
monocyte
53
HeLa-S3
49
H1-hESC
44
CD8-positive, alpha-beta T cell
37
endothelial cell
35
islet of Langerhans
33
macrophage
32
fibroblast
32
neural progenitor cell
26
hepatocyte
26
retina
23
smooth muscle cell
21
EndoC_BH1
21
pancreatic ductal cell
21
pericyte cell
20
K562
20
pigmented layer of retina
19
HFFc6
19
liver
18
adipocyte
17
pancreatic acinar cell
16
B cell
16
endothelial cell of hepatic sinusoid
16
pancreatic beta cell
15
CD14-positive monocyte
15
regulatory T cell
15
subcutaneous adipose tissue
14
coronary artery
14
excitatory neuron
14
kidney
14
pancreatic alpha cell
14
pancreatic delta cell
13
embryonic stem cell
12
astrocyte
12
heart
12
heart left ventricle
11
T cell
11
T-helper 1 cell
11
erythroblast
11
natural killer cell
11
pancreas
11
right atrium auricular region
11
tibial artery
11
tibial nerve
10
GM12878
10
T-helper 17 cell
10
caudate nucleus
10
frontal cortex
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic stellate cell
10
pituitary stalk
10
putamen
10
retinal pigment epithelial cell
9
adipose tissue
9
endothelial cell of umbilical vein
9
extended pluripotent stem (EPS) cells
9
memory B cell
9
mesenchymal stem cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
skeletal muscle satellite cell
8
Ammon's horn
8
body of pancreas
8
brain
8
cerebellum
8
dendritic cell
8
glutamatergic neuron
8
induced pluripotent stem cell
8
left cardiac atrium
8
skeletal muscle fiber
8
substantia nigra
7
CD4-positive, alpha-beta T cell
7
H9
7
ascending aorta
7
endothelial cell of lymphatic vessel
7
heart right ventricle
7
keratinocyte
7
lymphoblastoid cell line
7
mast cell
7
mature neutrophil
7
neutrophil
7
osteoblast
7
skeletal muscle myoblast
7
type I muscle cell
6
CD4-positive helper T cell
6
HepG2
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
cardiac muscle cell
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
stomach
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
epithelial cell of proximal tubule
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inflammatory macrophage
5
inhibitory neuron
5
left ventricle myocardium
5
muscle of leg
5
myofibroblast cell
5
ovary
5
pancreatic endothelial cell
psoas muscle
5
spleen
5
type II muscle cell
4
CyT49
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
choroid plexus epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
Organ
3
mammary gland
Date released
September, 2022
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
1
abc
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
psoas muscle
month_released!
February, 2021
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR577YXQ
released
Annotation file set
: Binding sites annotation for MCF-7 (MCF-7) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP