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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
62
HeLa-S3
57
A549
51
H1-hESC
38
K562
21
EndoC_BH1
19
HFFc6
18
MCF-7
13
GM12878
13
HepG2
10
H9
10
pituitary stalk
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
lymphocyte
8
SK-N-SH
8
induced pluripotent stem cell
7
NAMALWA cell
7
SK-N-DZ
7
lymphoblastoid cell line
6
22Rv1
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
T47D
6
iPSC derived cell line
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HAP-1
5
HCT116
5
HEK293
5
HL-60
5
HT-29
5
HUES8
5
LoVo cell
5
MM.1S
5
NT2-D1 cell
5
OCI-LY7
5
PC-9
5
SK-N-MC
5
WERI-Rb-1
4
A172
4
A673
4
ACHN
4
AG08396 cell
4
CMK
4
Caki2
4
CyT49
4
Daoy
4
GM03348
4
GM04503
4
GM04504
4
GM08714
4
GM10248
4
GM10266
4
GM12875
4
GM12891
4
GM12892
4
GM23248
4
H4
4
HUES6
4
HuH-7
4
KBM-7
4
L1-S8
4
L1-S8R
4
LHCN-M2
4
M059J
4
MG63
4
NB4
4
NCI-H226 cell
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SW480
4
iPS DF 19.11
3
8988T
3
ACC112
3
AG08395 cell
3
AG20443
3
C4-2B
3
COLO829
3
CWRU1
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM23338
3
H54
3
HCT-116 cell
3
HEK293T
3
HK-2 cell
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES64
3
HuH-7.5
3
Jurkat
3
KMS-11
3
KOPT-K1
3
Loucy
3
NCI-H460 cell
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
RWPE2
3
SK-MEL-5
3
SU-DHL-6
3
U937
3
UCSF-4
3
VCaP cell
3
WI38
3
colon carcinoma
3
colon epithelial cell
3
foreskin fibroblast
3
iPS DF 19.7
3
iPS DF 4.7 Cell Line
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
iPS-NIHi11
3
iPS-NIHi7
3
medulloblastoma
3
renal cell carcinoma
3
urothelium cell line
2
BJAB cell
2
DG-75 cell
2
ECC-1
2
ESC derived cell line
2
GM18505
2
GM19099
2
GM19193
2
HAC cell
2
HBMEC cell
2
LNCAP
2
MCF 10A cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MIN6
2
NCCIT cell
2
NHEK
2
Normal Human Astrocytes
2
PANC-1 cell
2
Rh-4 cell
2
SAEC
2
SK-N-SH_RA
2
SUDHL5
2
T-47D cell
2
THP-1
2
U-266 cell
2
U-87 MG
2
U2OS
2
WI-38 cell
2
Z-138
2
esophageal epithelial cell
2
fibroblast cell line
2
fibroblast of cardiac tissue
2
glomerular visceral epithelial cell
2
macrophage
2
muscle
2
spinal cord
1
786-O cell
1
A-673 cell
1
B-lymphoblastoid cell line
1
BL-2 cell
1
COLO-829 cell
1
COLO205
1
D341 Med cell
1
DND-41 cell
1
G-401 cell
1
GM10847
1
GM12801
1
GM12872
Disease term
3
squamous cell carcinoma
Organ
4
lung
Life stage
3
adult
Date released
3
September, 2022
2
May, 2021
February, 2021
1
June, 2020
Software used
2
abc
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
February, 2021
organ_slims!
adrenal gland
Showing 6 of 6 results
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Download
FileSet
DSR141LHZ
released
Annotation file set
: Candidate regulatory elements for BSS01359 NCI-H226 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683CJE
released
Annotation file set
: Target gene predictions for BSS01359 NCI-H226 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379SBY
released
Annotation file set
: Chromatin states for BSS01359 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR695DBX
released
Annotation file set
: enhancer-gene predicton of THP1_LPS_4hr-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR200CTI
released
Annotation file set
: enhancer-gene predicton of THP1-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR739JRN
released
Annotation file set
: Accessible chromatin annotation for Lung NCI-H226 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP