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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
8
22Rv1
8
H1-hESC
7
WI38
4
GM06990
4
GM12864
4
GM12865
4
KOPT-K1
4
L1-S8
4
PC-9
4
Panc1
3
CWRU1
3
GM12891
3
GM12892
3
HK-2 cell
3
L1-S8R
3
NCI-H460 cell
3
NT2-D1 cell
3
colon carcinoma
3
colon epithelial cell
1
BL-2 cell
1
DG-75 cell
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12873
1
GM12874
1
GM12875
1
GM13976
1
GM13977
1
HCEC 1CT
1
HK-2
1
JVM-2 cell
1
KARPAS-422 cell
1
NCI-H460
1
NT2/D1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
RKO
1
SUDHL5
1
U-266 cell
1
Z-138
1
smooth muscle cell of the coronary artery
Disease term
3
lung adenocarcinoma
Organ
4
lung
1
kidney
Life stage
5
unknown
Date released
3
September, 2022
1
February, 2021
1
March, 2020
Software used
3
r
1
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR591YWI
released
Annotation file set
: Candidate regulatory elements for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR808UQF
released
Annotation file set
: Target gene predictions for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896RWO
released
Annotation file set
: Chromatin states for BSS01415 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR671RAV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE PC-9
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR252PDX
released
Annotation file set
: Gene expression levels of RCC 7860 vector from RNA-seq (GSE67237)
Lab:
AMP-T2D consortium
Project:
AMP