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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
68
lung
67
muscle of arm
62
A549
58
muscle of leg
54
muscle of back
52
left lung
45
right lung
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
fibroblast of lung
16
skeletal muscle tissue
16
upper lobe of left lung
13
skeletal muscle satellite cell
11
esophagus muscularis mucosa
9
IMR-90
9
skeletal muscle fiber
9
stomach smooth muscle
8
PC-9
7
LHCN-M2
7
WI38
7
gastroesophageal sphincter
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
skeletal muscle cell
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
lung microvascular endothelial cell
5
myotube
4
NCI-H226 cell
4
NCI-H460 cell
4
rectum smooth muscle tissue
4
type I pneumocyte
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
NCI-H226
1
NCI-H460
1
aortic smooth muscle cell
1
endothelial cell of artery
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
lung neuroendocrine cell
1
rectal smooth muscle tissue
1
smooth muscle tissue
Disease term
3
lung adenocarcinoma
Organ
8
lung
0
musculature of body
Life stage
4
unknown
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
adrenal gland
Showing 8 of 8 results
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Download
FileSet
DSR591YWI
released
Annotation file set
: Candidate regulatory elements for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR808UQF
released
Annotation file set
: Target gene predictions for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896RWO
released
Annotation file set
: Chromatin states for BSS01415 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR671RAV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE PC-9
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026WMS
released
Annotation file set
: Histone modifications annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR997DEX
released
Annotation file set
: Binding sites annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR109GCX
released
Annotation file set
: Accessible chromatin annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP