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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
68
lung
62
A549
52
left lung
45
islet of Langerhans
45
right lung
25
pancreatic ductal cell
24
body of pancreas
22
pancreas
21
EndoC_BH1
18
pancreatic acinar cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
fibroblast of lung
16
pancreatic delta cell
16
upper lobe of left lung
15
endocrine pancreas
10
pancreatic stellate cell
9
IMR-90
8
PC-9
7
WI38
7
type II pneumocyte
6
pancreatic polypeptide-secreting cell
5
Panc1
5
lung microvascular endothelial cell
4
NCI-H226 cell
4
NCI-H460 cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
type B pancreatic cell
4
type I pneumocyte
3
8988T
3
HPDE6-E6E7
3
pancreatic quiescent stellate cell
2
pancreatic endocrine cell
1
NCI-H226
1
NCI-H460
1
activated pancreatic stellate cell
1
endothelial cell of artery
1
lung neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
quiescent pancreatic stellate cell
Disease term
3
lung adenocarcinoma
Organ
8
lung
0
pancreas
Life stage
4
unknown
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
blood vessel
Showing 8 of 8 results
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Download
FileSet
DSR591YWI
released
Annotation file set
: Candidate regulatory elements for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR808UQF
released
Annotation file set
: Target gene predictions for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896RWO
released
Annotation file set
: Chromatin states for BSS01415 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR671RAV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE PC-9
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026WMS
released
Annotation file set
: Histone modifications annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR997DEX
released
Annotation file set
: Binding sites annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR109GCX
released
Annotation file set
: Accessible chromatin annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP