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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
1
other
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Others
Annotation type Category
3
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
tissue
Biosample term
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
small intestine
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
muscle of back
52
left lung
49
liver
48
thymus
46
neural progenitor cell
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
34
heart left ventricle
34
spleen
32
adipose tissue
31
spinal cord
25
tibial nerve
24
body of pancreas
23
adipocyte
23
sigmoid colon
22
caudate nucleus
22
pancreas
21
coronary artery
21
ovary
21
subcutaneous adipose tissue
20
pigmented layer of retina
20
psoas muscle
19
heart right ventricle
19
right atrium auricular region
19
thyroid gland
19
tibial artery
19
transverse colon
18
gastrocnemius medialis
18
omental fat pad
18
substantia nigra
18
testis
17
muscle of trunk
16
ascending aorta
16
cerebellum
16
chorionic villus
16
frontal cortex
16
layer of hippocampus
16
skeletal muscle tissue
16
upper lobe of left lung
15
endocrine pancreas
15
putamen
14
Peyer's patch
14
embryonic stem cell
14
prostate gland
14
temporal lobe
13
aorta
12
Ammon's horn
12
left cardiac atrium
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
breast epithelium
11
cardiomyocytes
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
mesenchymal stem cell
11
right renal cortex interstitium
11
thoracic aorta
11
trophoblast
10
angular gyrus
10
chorion membrane
10
colonic mucosa
10
esophagus
10
lower leg skin
10
vagina
9
cingulate gyrus
9
duodenal mucosa
9
extended pluripotent stem (EPS) cells
9
eye
9
induced pluripotent stem cell
9
mucosa of rectum
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
right lobe of liver
9
stomach smooth muscle
9
uterus
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
endodermal cell
8
globus pallidus
8
limb
8
mesendoderm
8
midbrain
8
muscle layer of colon
8
muscle layer of duodenum
8
neuroblastoma cell line
8
neuronal stem cell
8
occipital lobe
8
right cardiac atrium
8
urinary bladder
7
amygdala
7
cardiac muscle cell
7
gastroesophageal sphincter
7
hypothalamus
7
mesodermal cell
7
nucleus accumbens
7
superior temporal gyrus
6
Brodmann (1909) area 46
6
anterior cingulate cortex
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
medulla oblongata
6
middle frontal gyrus
6
muscle cell
6
pons
6
retinal pigment epithelial cell
6
skin of body
6
subcutaneous abdominal adipose tissue
6
umbilical cord
5
C1 segment of cervical spinal cord
5
SGBS preadipocytes
5
cartilage tissue
5
cerebellar cortex
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
germinal matrix
5
left ventricle myocardium
5
neural cell
5
pancreatic ductal cell
5
smooth muscle cell
5
trophoblast cell
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adipose-derived stem cell
4
amnion
4
bone tissue
4
colon adenocarcinoma
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
ectodermal cell
4
embryonic facial prominence
4
femur
4
hepatocyte
4
inferior parietal cortex
4
islet precursor cell
4
mucosa of stomach
4
neuron
4
olfactory neurosphere cell line
4
rectum smooth muscle tissue
4
rhabdomyosarcoma cell
4
visceral abdominal adipose tissue
3
arm bone
3
cardiac mesoderm primordium
3
dorsolateral prefrontal cortex
3
esophageal adenocarcinoma
3
foreskin keratinocyte
3
foreskin melanocyte
3
germinal center
3
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
3
leg bone
3
mammary gland epithelial cell
3
pancreatic ductal adenocarcinoma
3
prefrontal cortex
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
BICR 31
2
CD4-positive helper T cell
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
T-lymphoma cell line
2
Th1 cell
2
atypical teratoid rhabdoid tumor
2
blood
2
breast carcinoma
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
endometrium cancer
2
endothelial cell
2
epidermal stem cell
Date released
3
May, 2020
2
November, 2019
Software used
2
deltasvm
2
macs
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
organ_slims!
tongue
Showing 5 of 5 results
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Download
FileSet
DSR181VXG
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835LQY
released
Annotation file set
: Genetic variants with deltaSVM predictions in beta cell iPS-derived pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR048FDK
released
Annotation file set
: Test annotation
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR163OWK
released
Annotation file set
: Induced Pluripotent Stem Cell derived from fibroblasts accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR003GNM
released
Annotation file set
: Induced Pluripotent Stem Cell derived from beta-cells accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP