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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
5
tsv
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
41
common myeloid progenitor, CD34-positive
27
B cell
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
CD8-positive, alpha-beta T cell
13
endothelial cell of umbilical vein
13
fibroblast of lung
13
mononuclear cell
13
natural killer cell
12
endothelial cell
12
pericyte cell
12
trophoblast cell
11
CD4-positive, alpha-beta T cell
11
T cell
11
T-helper 1 cell
11
fibroblast
11
regulatory T cell
10
T-helper 17 cell
10
T-helper 2 cell
10
foreskin fibroblast
10
keratinocyte
10
neurosphere
10
smooth muscle cell
9
fibroblast of dermis
9
skeletal muscle myoblast
8
dermis blood vessel endothelial cell
8
macrophage
8
mammary gland epithelial cell
8
neutrophil
7
epithelial cell of prostate
7
fibroblast of cardiac tissue
6
T-cell
6
astrocyte
6
bronchial epithelial cell
6
cardiac muscle cell
6
fibroblast of breast
6
hepatocyte
6
mammary epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
5
CD4-positive helper T cell
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
kidney tubule cell
5
monocyte
5
osteoblast
5
pancreatic delta cell
5
skin fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
basal cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
erythroblast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of the aortic adventitia
4
fibroblast of villous mesenchyme
4
glomerular endothelial cell
4
kidney epithelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
memory B cell
4
myofibroblast cell
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
peripheral blood mononuclear cell
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
4
skeletal muscle cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the brain vasculature
4
type II pneumocyte
3
CD1c-positive myeloid dendritic cell
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
fibroblast of gingiva
3
fibroblast of peridontal ligament
3
fibroblast of the conjunctiva
3
glomerular visceral epithelial cell
3
iris pigment epithelial cell
3
kidney glomerular epithelial cell
3
mesenchymal stem cell
3
non-pigmented ciliary epithelial cell
3
pancreatic A cell
3
pulmonary artery endothelial cell
3
stromal cell of bone marrow
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
2
cardiac fibroblast
2
Schwann cell
2
T follicular helper cell
2
activated CD4-positive, alpha-beta T cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of lymphatic vessel
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
extracellular matrix secreting cell
2
gabaergic neuron
2
gamma-delta T cell
2
glutamatergic neuron
2
goblet cell
2
hepatic stellate cell
2
kidney capillary endothelial cell
2
mammary stem cell
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesothelial cell
2
naive regulatory T cell
2
naive t cell
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular cardiac myocyte
2
skeletal muscle fiber
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
thyroid follicular cell
2
type I pneumocyte
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
CD34-PB
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic adventitial fibroblast
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
effector memory CD4-positive, alpha-beta T cell
1
endocardial cell
1
endothelial cell of artery
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
erythrocyte
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
granular cell of epidermis
1
granulosa cell
1
immature natural killer cell
1
inflammatory macrophage
1
intestinal tuft cell
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
microglial cell
1
myeloid dendritic cell
Organ
2
epithelium
2
lung
Date released
1
April, 2020
1
November, 2021
Software used
macs
1
abc
Lab
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
1
ENCODE
1
LungMap
RFA
1
ENCODE3
1
LungMap2
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE