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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
7
HepG2
6
22Rv1
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
3
A673
3
AG04449 cell
3
AG04450 cell
3
BE(2)-C
3
BJ cell
3
CMK
3
CWRU1
3
DND-41
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12891
3
GM12892
3
GM18507
3
H1-hESC
3
H7-hESC
3
H9
3
HEK293
3
HEK293T
3
HK-2 cell
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KOPT-K1
3
L1-S8
3
L1-S8R
3
MG63
3
NCI-H460 cell
3
NT2-D1 cell
3
PC-9
3
Panc1
3
SJCRH30
3
SK-N-MC
3
UCSF-4
3
WERI-Rb-1
3
WI38
3
colon carcinoma
3
colon epithelial cell
3
foreskin fibroblast
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 4.7 Cell Line
3
iPS DF 6.9
3
lymphocyte
3
medulloblastoma
3
urothelium cell line
1
leukemic stem cell
Organ
3
epithelium
3
intestine
3
large intestine
Life stage
adult
3
unknown
Date released
3
September, 2022
1
June, 2020
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
relevant_life_stage!
adult
Showing 3 of 3 results
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Download
FileSet
DSR635VAQ
released
Annotation file set
: Candidate regulatory elements for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR344FOH
released
Annotation file set
: Target gene predictions for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024YCW
released
Annotation file set
: Chromatin states for BSS00223 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP