Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
70
large intestine
26
sigmoid colon
23
transverse colon
22
HCT116
12
colonic mucosa
9
HT-29
9
colon epithelial cell
9
mucosa of rectum
8
SW480
8
muscle layer of colon
5
RKO
4
Caco-2
4
HCT-116 cell
4
rectum smooth muscle tissue
3
mucosa of descending colon
2
LoVo
2
left colon
1
HCEC 1CT
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
5
intestine
5
large intestine
Life stage
1
unknown
Date released
3
February, 2021
1
July, 2026
1
June, 2020
Software used
3
macs
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
Collection Tags
3
ChIP-Atlas
1
ENCODE
1
ENCODE-rE2G
RFA
5
AMP
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR786901
released
Annotation file set
: Target gene predictions for RKO (EFO:0001232) derived from ENCODE-rE2G (ENCSR628IVL).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR837ODF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RKO
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823SVP
released
Annotation file set
: Histone modifications annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR612HZP
released
Annotation file set
: Binding sites annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR501BQN
released
Annotation file set
: Accessible chromatin annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP