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Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
DNase-seq
1
ChIP-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
2636
whole blood
135
monocyte
93
fibroblast
91
endothelial cell
86
head of caudate nucleus
74
macrophage
73
CD8-positive, alpha-beta T cell
68
T-cell
67
smooth muscle cell
64
CD4-positive, alpha-beta T cell
59
HeLa-S3
59
dorsolateral prefrontal cortex
55
stimulated activated CD4-positive, alpha-beta T cell
53
heart
53
kidney
51
H1-hESC
50
stomach
48
posterior cingulate gyrus
46
hepatocyte
44
islet of Langerhans
42
B cell
42
natural killer cell
41
brain
40
adipocyte
40
neural progenitor cell
40
placenta
36
muscle of arm
35
adrenal gland
35
cardiac muscle cell
34
lung
34
pericyte
34
retina
33
T cell
33
activated CD4-positive, alpha-beta T cell
32
glutamatergic neuron
32
large intestine
32
muscle of leg
31
pancreatic ductal cell
31
small intestine
30
K562
30
muscle of back
29
heart left ventricle
29
naive thymus-derived CD4-positive, alpha-beta T cell
28
astrocyte
28
liver
27
CD14-positive monocyte
27
common myeloid progenitor, CD34-positive
27
keratinocyte
27
left lung
27
stimulated activated CD8-positive, alpha-beta memory T cell
25
hematopoietic multipotent progenitor cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
renal cortex interstitium
24
thymus
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
renal pelvis
23
right lung
22
A549
22
GABAergic neuron
22
naive thymus-derived CD8-positive, alpha-beta T cell
22
neuron
22
pancreas
22
right kidney
21
pericyte cell
21
spleen
20
H9
20
breast cancer cell
20
heart right ventricle
20
pigmented layer of retina
20
spinal cord
20
subcutaneous adipose tissue
19
HCT116
19
HFFc6
19
T-helper 17 cell
19
endocardial cell
19
glomerular endothelial cell
18
MCF-7
18
embryonic stem cell
18
mast cell
18
ovary
18
regulatory T cell
18
tibial nerve
17
erythroblast
17
foreskin fibroblast
17
left kidney
17
pancreatic acinar cell
17
pancreatic beta cell
16
body of pancreas
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
induced pluripotent stem cell
16
retinal pigment epithelial cell
15
T-helper 2 cell
15
activated T-cell
15
coronary artery
15
hepatic stellate cell
15
mammary epithelial cell
15
osteoblast
15
pancreatic alpha cell
15
tibial artery
14
activated CD8-positive, alpha-beta memory T cell
14
caudate nucleus
14
right atrium auricular region
14
thyroid follicular cell
13
GM12878
13
excitatory neuron
13
mesenchymal stem cell
13
naive B cell
13
neuronal stem cell
13
omental fat pad
13
skeletal muscle satellite cell
13
testis
13
trophoblast cell
13
upper lobe of left lung
12
adipose tissue
12
frontal cortex
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic delta cell
12
psoas muscle
12
putamen
12
substantia nigra
11
HepG2
11
ascending aorta
11
foreskin keratinocyte
11
left cardiac atrium
11
progenitor cell
11
progenitor cell of endocrine pancreas
11
skeletal muscle myoblast
11
type B pancreatic cell
10
Ammon's horn
10
Rhabdomyosarcoma
10
gastric cancer cell
10
gastrocnemius medialis
10
glomerular visceral epithelial cell
10
inflammatory macrophage
10
left renal cortex interstitium
10
mesothelial cell
10
pancreatic stellate cell
10
right lobe of liver
10
thyroid gland
9
B Cell
9
CD4-positive, alpha-beta memory T cell
9
cardiomyocytes
9
cerebellum
9
diffuse intrinsic pontine glioma
9
left renal pelvis
9
liposarcoma
9
megakaryocyte
9
memory B cell
9
oligodendrocyte
9
pancreatic A cell
9
right renal pelvis
9
sigmoid colon
9
transverse colon
8
IMR-90
8
fibroblast cell line
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
Peyer's patch
7
Schwann cell
7
amygdala
7
aorta
7
bronchial epithelial cell
7
cardiac fibroblast
7
cardiomyocytes (cardiac muscle cell)
7
cell of skeletal muscle
7
cholangiocyte
7
choroid plexus epithelial cell
7
effector memory CD8-positive, alpha-beta T cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of lung
7
leukocyte
7
mature neutrophil
7
medium spiny neuron
7
muscle precursor cell
7
oligodendrocyte precursor cell
7
prostate gland
7
temporal lobe
7
uterus
6
CD4-positive, CD25-positive, alpha-beta regulatory T cell
6
Chondroid Chordoma
6
HUES8
6
Jurkat
6
LNCAP
6
MG63
6
PC-9
6
SK-N-MC
6
adrenal gland glandular cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
central memory CD8-positive, alpha-beta T cell
6
chondrocyte
6
fibroblast of cardiac tissue
Organ
3
skin of body
Life stage
1
adult
Date released
September, 2022
1
February, 2021
1
July, 2026
1
June, 2020
Software used
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
Collection Tags
1
ChIP-Atlas
1
ENCODE
1
ENCODE-rE2G
RFA
3
AMP
month_released!
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR837063
released
Annotation file set
: Target gene predictions for RPMI7951 (EFO:0005712) derived from ENCODE-rE2G (ENCSR517RZQ).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991XXY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RPMI7951
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR752EOW
released
Annotation file set
: Accessible chromatin annotation for Epidermis RPMI-7951 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP