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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
27
endothelial cell
25
fibroblast
20
macrophage
16
endothelial cell of hepatic sinusoid
15
kidney
15
smooth muscle cell
13
hepatocyte
13
pancreatic alpha cell
13
pancreatic beta cell
12
excitatory neuron
12
pancreatic acinar cell
12
pancreatic delta cell
12
pancreatic ductal cell
12
pericyte cell
10
adipocyte
9
pancreatic stellate cell
9
skeletal muscle fiber
8
T cell
7
B cell
7
astrocyte
7
induced pluripotent stem cell
7
natural killer cell
6
endothelial cell of lymphatic vessel
6
enterocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
erythroblast
5
inhibitory neuron
5
left cardiac atrium
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
5
type II pneumocyte
4
CD8-positive, alpha-beta T cell
4
basal cell
4
cartilage tissue
4
cortical cell of adrenal gland
4
endocardial cell
4
islet of Langerhans
4
keratinocyte
4
mesenchymal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
colon epithelial cell
3
glial cell
3
goblet cell
3
liver
3
megakaryocyte
3
memory B cell
3
mesothelial cell
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
3
type I pneumocyte
2
ESC derived cell line
2
EndoC_BH1
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
dendritic cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
hepatic stellate cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mesangial cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
neuronal stem cell
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
stellate neuron
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD4-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H1-hESC
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
K562
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
caudate nucleus
1
cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cingulate gyrus
1
colon goblet cell
1
colonic mucosa
1
duodenal mucosa
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
Organ
4
connective tissue
Date released
3
February, 2024
1
October, 2022
Software used
abc
1
deeptools
1
eigenmt
1
macs
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
AMP-T2D consortium
4
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP2
lab.title!
AMP-T2D consortium
software_used.software.name!
abc
Showing 4 of 4 results
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Download
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP