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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
14
endothelial cell of hepatic sinusoid
11
hepatocyte
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
7
GM12878
7
endothelial cell
7
fibroblast
7
pancreatic ductal cell
6
H9
6
lymphocyte
6
olfactory receptor cell
6
skeletal muscle fiber
6
smooth muscle cell
5
T-helper 1 cell
5
left cardiac atrium
5
regulatory T cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
adipocyte
4
iPSC derived cell line
4
mesenchymal stem cell
4
type I muscle cell
4
type II muscle cell
3
CD4-positive helper T cell
3
Schwann cell
3
enterocyte
3
hepatocyte(AFP)
3
macrophage
3
myofibroblast cell
3
pancreatic acinar cell
2
GM18505
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
HCT116
2
MIN6
2
T cell
2
adipose-derived stem cell
2
basal cell
2
cardiac muscle cell
2
differentiating adipose-derived stem cell
2
epithelial cell of esophagus
2
erythroblast
2
fibroblast of lung
2
foreskin fibroblast
2
glial cell
2
goblet cell
2
leukocyte
2
neural cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
skeletal muscle satellite cell
2
vascular associated smooth muscle cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B cell
1
B-1a B cell
1
BE(2)-C
1
BJ cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Caco-2 cell
1
DND-41 cell
1
ECC-1
1
GM06990
1
GM08714
1
GM10847
1
GM12801
1
GM12864
1
GM12865
1
GM12872
1
GM12873
1
GM12874
1
GM12875
1
GM12891
1
GM12892
1
GM15510
1
GM18486
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM18526
1
GM18951
1
GM19141
1
GM19204
1
HAC cell
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HEK293-T-REx cell
1
HFF-Myc
1
HGPS cell
1
HL-60
1
HepG2
1
IMR-90
1
MCF-7
1
MCF10A-Er-Src cell
1
NB4
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
PANC-1 cell
1
PFSK-1 cell
1
Raji cell
1
SAEC
1
SH-SY5Y cell
1
SK-N-MC
1
SK-N-SH
1
SK-N-SH_RA
1
Satellite Cells, Skeletal Muscle
1
T-47D cell
1
T-helper 2 cell
1
U-87 MG
1
U2OS
1
WERI-Rb-1
1
WI-38 cell
1
aorta wall
1
aortic adventitial fibroblast
1
astrocyte
1
bronchial goblet cell
1
cardiac fibroblast
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
esophageal epithelial cell
1
excitatory neuron
1
fibroblast of dermis
1
fibroblast of mammary gland
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
glioblastoma cell
1
granulosa cell
1
hippocampal neuron
1
islet of Langerhans
1
keratinocyte
1
large intestine
1
liver
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
memory B cell
1
mesothelial cell
1
myotube
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
nephron tubule
1
osteoblast
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pigmented layer of retina
1
preadipocyte
1
renal epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle
1
skeletal muscle myoblast
1
spinal cord
1
subcutaneous adipose tissue
1
thyroid follicular cell
1
tissue-resident macrophage
1
type B pancreatic cell
1
type II pneumocyte
1
visceral abdominal adipose tissue
Organ
1
brain
1
epithelium
1
mammary gland
Date released
26
February, 2021
12
September, 2022
2
June, 2020
2
November, 2021
1
February, 2024
1
October, 2022
Software used
1
chromhmm
1
deltasvm
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR797FCT
released
Annotation file set
: Binding sites annotation for SK-N-MC (SK-N-MC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR732VXG
released
Annotation file set
: Variant allelic effects annotation of Mammary epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP