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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
69
heart
65
kidney
65
stomach
55
brain
52
lung
51
muscle of arm
47
small intestine
46
adrenal gland
45
placenta
42
large intestine
42
muscle of leg
41
islet of Langerhans
41
liver
41
muscle of back
39
left lung
37
retina
36
thymus
34
right lung
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
left kidney
27
spleen
26
heart left ventricle
25
adipose tissue
23
spinal cord
21
subcutaneous adipose tissue
21
tibial nerve
20
pigmented layer of retina
19
body of pancreas
19
caudate nucleus
19
pancreas
17
coronary artery
17
right atrium auricular region
17
sigmoid colon
16
omental fat pad
16
ovary
16
substantia nigra
16
tibial artery
15
psoas muscle
15
testis
14
cerebellum
14
frontal cortex
14
heart right ventricle
14
putamen
14
thyroid gland
14
transverse colon
13
ascending aorta
13
gastrocnemius medialis
13
layer of hippocampus
13
skeletal muscle tissue
13
upper lobe of left lung
12
chorionic villus
12
muscle of trunk
12
prostate gland
11
Ammon's horn
11
Peyer's patch
11
endocrine pancreas
11
left cardiac atrium
10
left renal cortex interstitium
10
left renal pelvis
10
right renal pelvis
10
temporal lobe
9
aorta
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
9
right renal cortex interstitium
9
trophoblast
8
breast epithelium
8
colonic mucosa
8
esophagus
8
lower leg skin
8
right lobe of liver
8
thoracic aorta
8
vagina
7
amygdala
7
chorion membrane
7
cingulate gyrus
7
duodenal mucosa
7
eye
7
globus pallidus
7
hypothalamus
7
midbrain
7
mucosa of rectum
7
nucleus accumbens
7
occipital lobe
7
parathyroid adenoma
7
stomach smooth muscle
7
tongue
7
uterus
6
angular gyrus
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
gastroesophageal sphincter
6
limb
6
muscle layer of colon
6
muscle layer of duodenum
6
subcutaneous abdominal adipose tissue
6
superior temporal gyrus
6
urinary bladder
5
C1 segment of cervical spinal cord
5
cartilage tissue
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
medulla oblongata
5
middle frontal gyrus
5
pons
5
right cardiac atrium
5
skin of body
5
umbilical cord
4
Brodmann (1909) area 46
4
bone tissue
4
cerebellar cortex
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
visceral abdominal adipose tissue
3
amnion
3
dorsolateral prefrontal cortex
3
embryonic facial prominence
3
femur
3
germinal matrix
3
inferior parietal cortex
3
mucosa of stomach
3
prefrontal cortex
3
rectum smooth muscle tissue
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
arm bone
2
blood
2
breast carcinoma
2
chorion
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
forelimb muscle
2
germinal center
2
kidney epithelium
2
leg bone
2
mammary gland
2
middle frontal area 46
2
minor salivary gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
frontal pole
Organ
1
kidney
Life stage
1
adult
Date released
1
February, 2024
1
March, 2024
Software used
1
macs
1
r
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
files.file_type!
bed bed9
month_released!
May, 2021
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR200YVF
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Kidney - Medulla.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR062PXW
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Schwann
Lab:
Kyle Gaulton, UCSD
Project:
AMP