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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
gene expression
Annotation Category
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
2
snATAC-seq
1
scRNA-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
128
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
40
B cell
39
endothelial cell
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
31
CD14-positive monocyte
28
macrophage
26
regulatory T cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
T-helper 1 cell
21
T-helper 17 cell
21
natural killer cell
20
glomerular endothelial cell
20
mononuclear cell
20
smooth muscle cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
18
pancreatic beta cell
18
pancreatic ductal cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
pancreatic alpha cell
17
trophoblast cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
skeletal muscle myoblast
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
excitatory neuron
12
mammary epithelial cell
11
bronchial epithelial cell
11
erythroblast
10
dermis blood vessel endothelial cell
10
glomerular visceral epithelial cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
fibroblast of breast
8
glutamatergic neuron
8
myoepithelial cell of mammary gland
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
renal cortical epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
mast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
pulmonary artery endothelial cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
4
activated CD4-positive, alpha-beta T cell
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
aortic adventitial fibroblast
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
glial cell
3
goblet cell
3
kidney cell
Life stage
1
adult
Date released
2
February, 2024
1
May, 2021
Software used
2
deltasvm
1
r
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
June, 2020
organ_slims!
connective tissue
limb
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR997FCC
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of Schwann cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333IHE
released
Annotation file set
: Variant allelic effects annotation of schwann cells from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR043PQT
released
Annotation file set
: Variant allelic effects annotation of schwann cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP