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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
130
monocyte
50
CD8-positive, alpha-beta T cell
39
endothelial cell
30
hepatocyte
29
fibroblast
28
macrophage
20
epithelial cell of proximal tubule
20
smooth muscle cell
19
CD14-positive monocyte
19
pancreatic ductal cell
19
pericyte cell
19
regulatory T cell
18
glomerular endothelial cell
17
pancreatic beta cell
16
B cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic alpha cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
14
T-helper 1 cell
14
astrocyte
14
endothelial cell of umbilical vein
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
osteoblast
14
pancreatic delta cell
13
foreskin fibroblast
13
mammary epithelial cell
12
T-helper 17 cell
12
excitatory neuron
12
natural killer cell
11
erythroblast
11
keratinocyte
10
T cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neutrophil
9
skeletal muscle fiber
8
T-helper 2 cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
pancreatic stellate cell
7
cardiac muscle cell
7
fibroblast of lung
7
foreskin keratinocyte
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
alternatively activated macrophage
6
bronchial epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
hepatic stellate cell
6
mast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
trophoblast cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
T follicular helper cell
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
kidney tubule cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Ishikawa
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
erythroid cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
foreskin melanocyte
3
glial cell
3
goblet cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell of the brain vasculature
3
smooth muscle cell of the coronary artery
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
Date released
September, 2023
3
November, 2021
Software used
2
macs
1
abc
Lab
3
Bing Ren, UCSD
Project
3
ENCODE
RFA
3
ENCODE3
month_released!
September, 2022
September, 2023
Showing 3 of 3 results
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Download
FileSet
DSR263RIW
released
Annotation file set
: Target gene predictions of Oligodendrocyte Precursor from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR616QDE
released
Annotation file set
: Accessible chromatin annotation of Oligodendrocyte Precursor from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR111GKW
released
Annotation file set
: Accessible chromatin annotation of Fetal Oligodendrocyte Progenitor 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE