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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
6
DNase-seq
4
ChIP-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
114
monocyte
54
common myeloid progenitor, CD34-positive
46
CD8-positive, alpha-beta T cell
34
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
26
endothelial cell
25
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
21
T-helper 1 cell
21
hepatocyte
20
glomerular endothelial cell
20
mononuclear cell
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
18
natural killer cell
18
trophoblast cell
17
T cell
17
macrophage
16
fibroblast of lung
16
foreskin fibroblast
15
T-helper 2 cell
15
fibroblast
15
keratinocyte
15
neutrophil
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
osteoblast
14
pancreatic ductal cell
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
smooth muscle cell
12
bronchial epithelial cell
12
fibroblast of dermis
12
mammary gland epithelial cell
12
pericyte cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
10
glomerular visceral epithelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
9
astrocyte
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
skeletal muscle satellite cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
myoepithelial cell of mammary gland
8
retinal pigment epithelial cell
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
6
T-cell
6
alternatively activated macrophage
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
erythroblast
6
foreskin melanocyte
6
glutamatergic neuron
6
kidney epithelial cell
6
kidney interstitial cell
6
mesenchymal stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
non-pigmented ciliary epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
myofibroblast cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
basal cell
3
blood cell
3
bone marrow cell
3
central memory CD8-positive, alpha-beta T cell
Life stage
2
adult
2
unknown
Date released
4
February, 2021
2
May, 2021
Software used
4
encode-ccres
2
abc
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
files.file_type!
bigWig
month_released!
August, 2020
organ_slims!
esophagus
Showing 6 of 6 results
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Download
FileSet
DSR070OPV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683BML
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR698BIL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR801BXT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR331JNK
released
Annotation file set
: enhancer-gene predicton of T-cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR982CMQ
released
Annotation file set
: enhancer-gene predicton of CD3-positive_T_cell-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP